Format

Send to:

Choose Destination

Tceal5 transcription elongation factor A (SII)-like 5 [ Mus musculus (house mouse) ]

Gene ID: 331532, updated on 23-Jun-2021

Summary

Official Symbol
Tceal5provided by MGI
Official Full Name
transcription elongation factor A (SII)-like 5provided by MGI
Primary source
MGI:MGI:3036236
See related
Ensembl:ENSMUSG00000054034
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
6430401A05Rik
Expression
Biased expression in frontal lobe adult (RPKM 53.5), cortex adult (RPKM 43.7) and 10 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Tceal5 in Genome Data Viewer
Location:
X; X F1
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) X NC_000086.8 (135101697..135104633, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (136200948..136203884, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) X NC_000086.6 (132735490..132738390, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene microRNA 6383 Neighboring gene predicted gene, 41901 Neighboring gene nuclear encoded tRNA lysine 19 (anticodon CTT) Neighboring gene predicted gene, 51612 Neighboring gene brain expressed X-linked 1 Neighboring gene transcription elongation factor A (SII)-like 7

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables WW domain binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
transcription elongation factor A protein-like 5
Names
TCEA-like protein 5
transcription elongation factor S-II protein-like 5

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001365117.1NP_001352046.1  transcription elongation factor A protein-like 5

    Status: VALIDATED

    Source sequence(s)
    AK032140, BE991033, BY136503
    Consensus CDS
    CCDS30416.1
    Conserved Domains (1) summary
    pfam04538
    Location:55170
    BEX; Brain expressed X-linked like family
  2. NM_001365118.1NP_001352047.1  transcription elongation factor A protein-like 5

    Status: VALIDATED

    Source sequence(s)
    AL772180
    Consensus CDS
    CCDS30416.1
    Conserved Domains (1) summary
    pfam04538
    Location:55170
    BEX; Brain expressed X-linked like family
  3. NM_177919.3NP_808587.1  transcription elongation factor A protein-like 5

    See identical proteins and their annotated locations for NP_808587.1

    Status: VALIDATED

    Source sequence(s)
    AK032140, BE991033, BY245586
    Consensus CDS
    CCDS30416.1
    UniProtKB/Swiss-Prot
    Q8CCT4
    UniProtKB/TrEMBL
    Q14C38
    Related
    ENSMUSP00000065397.5, ENSMUST00000066819.11
    Conserved Domains (1) summary
    pfam04538
    Location:55170
    BEX; Brain expressed X-linked like family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    135101697..135104633 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center