Format

Send to:

Choose Destination

Krt78 keratin 78 [ Mus musculus (house mouse) ]

Gene ID: 332131, updated on 23-Jun-2021

Summary

Official Symbol
Krt78provided by MGI
Official Full Name
keratin 78provided by MGI
Primary source
MGI:MGI:1917529
See related
Ensembl:ENSMUSG00000050463
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Kb40; 2310030B04Rik
Expression
Biased expression in stomach adult (RPKM 6.1), lung adult (RPKM 4.9) and 2 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Krt78 in Genome Data Viewer
Location:
15; 15 F2
Exon count:
13
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (101854436..101905059, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (101946001..101996624, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (101776435..101784718, complement)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene keratin 4 Neighboring gene keratin 79 Neighboring gene keratin 8 Neighboring gene predicted gene, 36026

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_212487.4NP_997652.4  keratin Kb40

    Status: VALIDATED

    Source sequence(s)
    AK146611, BK004080, BY792966
    Consensus CDS
    CCDS49736.1
    UniProtKB/TrEMBL
    E9Q0F0, Q6IFT3
    Related
    ENSMUSP00000126197.2, ENSMUST00000164932.3
    Conserved Domains (5) summary
    COG0845
    Location:272590
    AcrA; Multidrug efflux pump subunit AcrA (membrane-fusion protein) [Cell wall/membrane/envelope biogenesis, Defense mechanisms]
    cl21524
    Location:277379
    PRK13923; putative spore coat protein regulator protein YlbO; Provisional
    pfam00038
    Location:104417
    Filament; Intermediate filament protein
    pfam15272
    Location:167314
    BBP1_C; Spindle pole body component BBP1, C-terminal
    pfam16208
    Location:63101
    Keratin_2_head; Keratin type II head

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    101854436..101905059 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011245680.2XP_011243982.1  keratin Kb40 isoform X2

    Conserved Domains (3) summary
    COG0845
    Location:229547
    AcrA; Multidrug efflux pump subunit AcrA (membrane-fusion protein) [Cell wall/membrane/envelope biogenesis, Defense mechanisms]
    pfam09606
    Location:426721
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam00038
    Location:61374
    Filament; Intermediate filament protein
  2. XM_006521114.4XP_006521177.1  keratin Kb40 isoform X1

    Conserved Domains (4) summary
    COG0845
    Location:358676
    AcrA; Multidrug efflux pump subunit AcrA (membrane-fusion protein) [Cell wall/membrane/envelope biogenesis, Defense mechanisms]
    pfam09606
    Location:555850
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam00038
    Location:190503
    Filament; Intermediate filament protein
    pfam16208
    Location:147187
    Keratin_2_head; Keratin type II head
Support Center