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Gm5134 predicted gene 5134 [ Mus musculus (house mouse) ]

Gene ID: 333669, updated on 8-Feb-2024

Summary

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Official Symbol
Gm5134provided by MGI
Official Full Name
predicted gene 5134provided by MGI
Primary source
MGI:MGI:3646667
See related
Ensembl:ENSMUSG00000033255 AllianceGenome:MGI:3646667
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG333669
Summary
Predicted to enable glucose:sodium symporter activity. Predicted to be involved in sodium ion transport. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 6.9), thymus adult (RPKM 1.2) and 1 other tissue See more
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Genomic context

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Location:
10 C1; 10 38.63 cM
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (75790330..75845425)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (75954496..76009591)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_27166 Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 10 Neighboring gene STARR-positive B cell enhancer ABC_E11443 Neighboring gene STARR-positive B cell enhancer ABC_E5150 Neighboring gene predicted gene 867 Neighboring gene 60S ribosomal protein L27 pseudogene Neighboring gene V-set pre-B cell surrogate light chain 3 Neighboring gene predicted gene, 40698 Neighboring gene STARR-seq mESC enhancer starr_27167 Neighboring gene STARR-positive B cell enhancer ABC_E8345 Neighboring gene STARR-seq mESC enhancer starr_27168 Neighboring gene microRNA 6409 Neighboring gene STARR-seq mESC enhancer starr_27169 Neighboring gene STARR-positive B cell enhancer ABC_E3892 Neighboring gene zinc finger protein 280B Neighboring gene STARR-seq mESC enhancer starr_27170 Neighboring gene STARR-seq mESC enhancer starr_27172 Neighboring gene solute carrier family 5 (neutral amino acid transporters, system A), member 4b Neighboring gene predicted gene 16222

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Post-entrapment genome engineering: first exon size does not affect the expression of fusion transcripts generated by gene entrapment. Osipovich AB, et al. Genome Res, 2005 Mar. PMID 15741512, Free PMC Article
  2. A mutation in the pericentrin gene causes abnormal interneuron migration to the olfactory bulb in mice. Endoh-Yamagami S, et al. Dev Biol, 2010 Apr 1. PMID 20096683
  3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 
  • Targeted (1) 

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables glucose:sodium symporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in sodium ion transport IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
solute carrier family 5 (sodium/glucose cotransporter)-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_198635.3 → NP_941037.2  solute carrier family 5 (sodium/glucose cotransporter)-like

    Status: VALIDATED

    Source sequence(s)
    AK041995, AK133270, BX523577
    Consensus CDS
    CCDS35940.2
    UniProtKB/TrEMBL
    E9QAB5, Q3V0B7
    Related
    ENSMUSP00000097172.4, ENSMUST00000099577.4
    Conserved Domains (1) summary
    cl00456
    Location:26 → 671
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    75790330..75845425
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006513791.4 → XP_006513854.1  solute carrier family 5 (sodium/glucose cotransporter)-like isoform X1

    UniProtKB/TrEMBL
    Q3V0B7
    Conserved Domains (1) summary
    cl00456
    Location:26 → 695
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  2. XM_036155860.1 → XP_036011753.1  solute carrier family 5 (sodium/glucose cotransporter)-like isoform X4

    Conserved Domains (1) summary
    cl00456
    Location:26 → 554
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  3. XM_036155858.1 → XP_036011751.1  solute carrier family 5 (sodium/glucose cotransporter)-like isoform X2

    UniProtKB/TrEMBL
    Q3V0B7
    Conserved Domains (1) summary
    cl00456
    Location:26 → 660
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  4. XM_036155859.1 → XP_036011752.1  solute carrier family 5 (sodium/glucose cotransporter)-like isoform X3

    UniProtKB/TrEMBL
    Q3V0B7
    Conserved Domains (1) summary
    cl00456
    Location:44 → 636
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  5. XM_036155861.1 → XP_036011754.1  solute carrier family 5 (sodium/glucose cotransporter)-like isoform X5

    Conserved Domains (1) summary
    cl00456
    Location:26 → 553
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  6. XM_036155862.1 → XP_036011755.1  solute carrier family 5 (sodium/glucose cotransporter)-like isoform X6

    Conserved Domains (1) summary
    cl00456
    Location:26 → 481
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  7. XM_011243495.4 → XP_011241797.1  solute carrier family 5 (sodium/glucose cotransporter)-like isoform X7

    Conserved Domains (1) summary
    cl00456
    Location:26 → 426
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

RNA

  1. XR_004936205.1 RNA Sequence

  2. XR_871715.3 RNA Sequence

  3. XR_380409.4 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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