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Gm5134 predicted gene 5134 [ Mus musculus (house mouse) ]

Gene ID: 333669, updated on 23-Jun-2021

Summary

Official Symbol
Gm5134provided by MGI
Official Full Name
predicted gene 5134provided by MGI
Primary source
MGI:MGI:3646667
See related
Ensembl:ENSMUSG00000033255
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG333669
Expression
Biased expression in testis adult (RPKM 6.9), thymus adult (RPKM 1.2) and 1 other tissue See more
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Genomic context

See Gm5134 in Genome Data Viewer
Location:
10 C1; 10
Exon count:
18
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (75790330..75845425)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (75954496..76009591)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (75417259..75472336)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 10 Neighboring gene predicted gene 867 Neighboring gene 60S ribosomal protein L27 pseudogene Neighboring gene pre-B lymphocyte gene 3 Neighboring gene predicted gene, 40698 Neighboring gene microRNA 6409 Neighboring gene zinc finger protein 280B Neighboring gene solute carrier family 5 (neutral amino acid transporters, system A), member 4b Neighboring gene predicted gene 16222

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 
  • Targeted (1) 

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables glucose:sodium symporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in sodium ion transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in integral component of membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
solute carrier family 5 (sodium/glucose cotransporter)-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_198635.3NP_941037.2  solute carrier family 5 (sodium/glucose cotransporter)-like

    Status: VALIDATED

    Source sequence(s)
    AK041995, AK133270, BX523577
    Consensus CDS
    CCDS35940.2
    UniProtKB/TrEMBL
    E9QAB5, Q3V0B7, Q8BIM1
    Related
    ENSMUSP00000097172.4, ENSMUST00000099577.4
    Conserved Domains (1) summary
    cl00456
    Location:26671
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    75790330..75845425
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006513791.4XP_006513854.1  solute carrier family 5 (sodium/glucose cotransporter)-like isoform X1

    Conserved Domains (1) summary
    cl00456
    Location:26695
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
  2. XM_036155860.1XP_036011753.1  solute carrier family 5 (sodium/glucose cotransporter)-like isoform X4

    Conserved Domains (1) summary
    cl00456
    Location:26554
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
  3. XM_036155858.1XP_036011751.1  solute carrier family 5 (sodium/glucose cotransporter)-like isoform X2

    Conserved Domains (1) summary
    cl00456
    Location:26660
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
  4. XM_036155859.1XP_036011752.1  solute carrier family 5 (sodium/glucose cotransporter)-like isoform X3

    Conserved Domains (1) summary
    cl00456
    Location:44636
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
  5. XM_036155861.1XP_036011754.1  solute carrier family 5 (sodium/glucose cotransporter)-like isoform X5

    Conserved Domains (1) summary
    cl00456
    Location:26553
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
  6. XM_036155862.1XP_036011755.1  solute carrier family 5 (sodium/glucose cotransporter)-like isoform X6

    Conserved Domains (1) summary
    cl00456
    Location:26481
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
  7. XM_011243495.4XP_011241797.1  solute carrier family 5 (sodium/glucose cotransporter)-like isoform X7

    Conserved Domains (1) summary
    cl00456
    Location:26426
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

RNA

  1. XR_004936205.1 RNA Sequence

  2. XR_871715.3 RNA Sequence

  3. XR_380409.4 RNA Sequence

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