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PKD1P1 polycystin 1, transient receptor potential channel interacting pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 339044, updated on 26-Aug-2021

Summary

Official Symbol
PKD1P1provided by HGNC
Official Full Name
polycystin 1, transient receptor potential channel interacting pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:30065
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HG1; NPIP
Expression
Ubiquitous expression in ovary (RPKM 40.0), testis (RPKM 38.3) and 25 other tissues See more
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Genomic context

See PKD1P1 in Genome Data Viewer
Location:
16p13.11
Exon count:
31
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 16 NC_000016.10 (16317609..16350608)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (16411466..16444465)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371099 Neighboring gene microRNA 3670-2 Neighboring gene microRNA 3180-2 Neighboring gene microRNA 6511a-2 Neighboring gene microRNA 6770-2 Neighboring gene polycystin 1, transient receptor potential channel interacting pseudogene 2 Neighboring gene microRNA 6511a-3 Neighboring gene uncharacterized LOC105371098 Neighboring gene nuclear pore complex interacting protein family member A7

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • KIAA0220-like protein
  • NPIP-like protein 1
  • nuclear pore complex-interacting protein
  • polycystic kidney disease 1 (autosomal dominant) pseudogene 1

Clone Names

  • FLJ00322, FLJ42525, FLJ44848, FLJ56775, FLJ56871, FLJ59085, KIAA0220, MGC47688

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_036447.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC138969
  2. NR_172900.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC138969
  3. NR_172901.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC138969

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p13 Primary Assembly

    Range
    16317609..16350608
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_1

Genomic

  1. NT_187607.1 Reference GRCh38.p13 ALT_REF_LOCI_1

    Range
    1975582..2009798
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_002797.3: Suppressed sequence

    Description
    NG_002797.3: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.
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