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CG17996 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 34998, updated on 4-Apr-2024

Summary

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Official Symbol
CG17996provided by FlyBase
Primary source
FLYBASE:FBgn0032595
Locus tag
Dmel_CG17996
See related
AllianceGenome:FB:FBgn0032595
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
BcDNA:GM20557; Dmel\CG17996
Summary
Predicted to enable copper ion binding activity. Predicted to be involved in mitochondrial cytochrome c oxidase assembly. Predicted to be located in mitochondrial intermembrane space. Predicted to be active in mitochondrion. Orthologous to human CMC1 (C-X9-C motif containing 1). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See CG17996 in Genome Data Viewer
Location:
36A12-36A12; 2-52 cM
Exon count:
2
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (16730458..16731039, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (16730458..16731039, complement)

Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene Vacuolar H[+]-ATPase SFD subunit Neighboring gene mir-1006 stem loop Neighboring gene pseudo Neighboring gene tRNA splicing endonuclease subunit 2 Neighboring gene Proteasome beta4 subunit Neighboring gene NUBP iron-sulfur cluster assembly factor 1 Neighboring gene gluon

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic, functional and evolutionary characterization of scox, the Drosophila melanogaster ortholog of the human SCO1 gene. Porcelli D, et al. Mitochondrion, 2010 Aug. PMID 20388558
  2. mRNA-Associated Processes and Their Influence on Exon-Intron Structure in Drosophila melanogaster. Lepennetier G, et al. G3 (Bethesda), 2016 Jun 1. PMID 27172210, Free PMC Article
  3. Phylostratigraphic bias creates spurious patterns of genome evolution. Moyers BA, et al. Mol Biol Evol, 2015 Jan. PMID 25312911, Free PMC Article
  4. High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Batut P, et al. Genome Res, 2013 Jan. PMID 22936248, Free PMC Article
  5. Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species. Sanfilippo P, et al. Genome Biol, 2017 Nov 30. PMID 29191225, Free PMC Article

See all (19) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables copper ion binding ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in mitochondrial cytochrome c oxidase assembly ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in mitochondrial intermembrane space ISS
Inferred from Sequence or Structural Similarity
more info
  
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG17996-PA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033779.5 Reference assembly

    Range
    16730458..16731039 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_135959.2 → NP_609803.1  uncharacterized protein Dmel_CG17996 [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_609803.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VJJ1
    Related
    FBpp0080491
    Conserved Domains (1) summary
    pfam08583
    Location:34 → 103
    Cmc1; Cytochrome c oxidase biogenesis protein Cmc1 like
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8MSY9 Q8MSY9
Q9VJJ1 Q9VJJ1

Gene LinkOut

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