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Defb38 defensin beta 38 [ Mus musculus (house mouse) ]

Gene ID: 360212, updated on 23-Jun-2021

Summary

Official Symbol
Defb38provided by MGI
Official Full Name
defensin beta 38provided by MGI
Primary source
MGI:MGI:2672972
See related
Ensembl:ENSMUSG00000053790
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
BD-38
Expression
Restricted expression toward genital fat pad adult (RPKM 11.5) See more
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Genomic context

See Defb38 in Genome Data Viewer
Location:
8; 8 A1.3
Exon count:
2
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (19073420..19076584, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (19023404..19026568, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (19023464..19026529, complement)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene defensin beta 40 Neighboring gene defensin beta 37 Neighboring gene predicted gene, 39138 Neighboring gene UPF0492 protein C20orf94 homolog Neighboring gene defensin beta 39

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables CCR6 chemokine receptor binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within defense response IEA
Inferred from Electronic Annotation
more info
 
involved_in defense response IEA
Inferred from Electronic Annotation
more info
 
involved_in defense response to Gram-negative bacterium IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in defense response to Gram-positive bacterium IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within defense response to bacterium IEA
Inferred from Electronic Annotation
more info
 
involved_in innate immune response in mucosa IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_183036.2NP_898857.1  beta-defensin 38 precursor

    See identical proteins and their annotated locations for NP_898857.1

    Status: VALIDATED

    Source sequence(s)
    AC119161
    Consensus CDS
    CCDS40248.1
    UniProtKB/Swiss-Prot
    Q7TNV7
    UniProtKB/TrEMBL
    Q05A65
    Related
    ENSMUSP00000067553.4, ENSMUST00000066416.4
    Conserved Domains (1) summary
    pfam00711
    Location:2860
    Defensin_beta; Beta defensin

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    19073420..19076584 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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