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Rdh7 retinol dehydrogenase 7 [ Rattus norvegicus (Norway rat) ]

Gene ID: 360420, updated on 30-Sep-2021

Summary

Official Symbol
Rdh7provided by RGD
Official Full Name
retinol dehydrogenase 7provided by RGD
Primary source
RGD:631370
See related
EnsemblRapid:ENSRNOG00000004391
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Rdh3; RoDH(III); RGD1307178
Summary
catalyzes the first step in retinoic acid biogenesis [RGD, Feb 2006]
Expression
Restricted expression toward (RPKM 3000.8) See more
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Genomic context

See Rdh7 in Genome Data Viewer
Location:
7q22
Exon count:
4
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (63676016..63689375, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (71125358..71164014, complement)

Chromosome 7 - NC_051342.1Genomic Context describing neighboring genes Neighboring gene similar to Retinol dehydrogenase type II (RODH II) (29 k-protein) Neighboring gene retinol dehydrogenase 7-like Neighboring gene protein NYNRIN-like Neighboring gene short chain dehydrogenase/reductase family 9C, member 7 Neighboring gene ubiquinol-cytochrome c reductase binding protein

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Clone Names

  • MGC108523, MGC112590

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables NAD-retinol dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in retinol metabolic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
retinol dehydrogenase 7
Names
RODH I
RODH III
hypothetical gene supported by NM_133543
retinol dehydrogenase 3
retinol dehydrogenase type III
NP_598227.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_133543.3NP_598227.3  retinol dehydrogenase 7 precursor

    See identical proteins and their annotated locations for NP_598227.3

    Status: PROVISIONAL

    Source sequence(s)
    BC088090
    UniProtKB/Swiss-Prot
    P55006
    Related
    ENSRNOP00000005875.7, ENSRNOT00000005875.8
    Conserved Domains (2) summary
    cd09805
    Location:30306
    type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs
    pfam00106
    Location:30214
    adh_short; short chain dehydrogenase

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051342.1 Reference mRatBN7.2 Primary Assembly

    Range
    63676016..63689375 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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