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Mfsd11 major facilitator superfamily domain containing 11 [ Rattus norvegicus (Norway rat) ]

Gene ID: 360667, updated on 5-Mar-2024

Summary

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Official Symbol
Mfsd11provided by RGD
Official Full Name
major facilitator superfamily domain containing 11provided by RGD
Primary source
RGD:1307394
See related
Ensembl:ENSRNOG00000000247 AllianceGenome:RGD:1307394
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1307394
Summary
Predicted to be integral component of membrane. Orthologous to human MFSD11 (major facilitator superfamily domain containing 11). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Kidney (RPKM 91.4), Adrenal (RPKM 70.8) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
10q32.2
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (102554409..102573866)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (102055516..102075064)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (105796108..105815696)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene methyltransferase 23, arginine Neighboring gene serine and arginine rich splicing factor 2 Neighboring gene alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B Neighboring gene uncharacterized LOC100912002 Neighboring gene small Cajal body-specific RNA 16

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
UNC93-like protein MFSD11

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108308.1 → NP_001101778.1  UNC93-like protein MFSD11

    See identical proteins and their annotated locations for NP_001101778.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473948
    UniProtKB/TrEMBL
    A0A8I6AUJ5, A6HL02, D3ZEI8
    Conserved Domains (1) summary
    pfam05978
    Location:14 → 166
    UNC-93; Ion channel regulatory protein UNC-93

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    102554409..102573866
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006247810.4 → XP_006247872.1  UNC93-like protein MFSD11 isoform X1

    See identical proteins and their annotated locations for XP_006247872.1

    UniProtKB/TrEMBL
    A0A8I6AUJ5, A6HL02, D3ZEI8
    Related
    ENSRNOP00000000264.6
    Conserved Domains (1) summary
    pfam05978
    Location:14 → 166
    UNC-93; Ion channel regulatory protein UNC-93

  2. XM_006247809.5 → XP_006247871.1  UNC93-like protein MFSD11 isoform X1

    See identical proteins and their annotated locations for XP_006247871.1

    UniProtKB/TrEMBL
    A0A8I6AUJ5, A6HL02, D3ZEI8
    Conserved Domains (1) summary
    pfam05978
    Location:14 → 166
    UNC-93; Ion channel regulatory protein UNC-93

  3. XM_063269478.1 → XP_063125548.1  UNC93-like protein MFSD11 isoform X2

  4. XM_039086437.2 → XP_038942365.1  UNC93-like protein MFSD11 isoform X3

    Conserved Domains (1) summary
    cl28910
    Location:11 → 292
    MFS; Major Facilitator Superfamily

  5. XM_039086438.2 → XP_038942366.1  UNC93-like protein MFSD11 isoform X4

    Conserved Domains (1) summary
    cl28910
    Location:11 → 196
    MFS; Major Facilitator Superfamily

  6. XM_039086439.2 → XP_038942367.1  UNC93-like protein MFSD11 isoform X5

    Conserved Domains (1) summary
    cl28910
    Location:28 → 226
    MFS; Major Facilitator Superfamily
Nucleotide Protein Strain
Heading Accession and Version

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