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Tmem192 transmembrane protein 192 [ Rattus norvegicus (Norway rat) ]

Gene ID: 361137, updated on 24-Jul-2021

Summary

Official Symbol
Tmem192provided by RGD
Official Full Name
transmembrane protein 192provided by RGD
Primary source
RGD:1309341
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1309341
Expression
Biased expression in Adrenal (RPKM 88.3), Kidney (RPKM 87.0) and 9 other tissues See more
Orthologs
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Genomic context

See Tmem192 in Genome Data Viewer
Location:
16p13
Exon count:
6
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (24740166..24760994, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (26620525..26642537, complement)

Chromosome 16 - NC_051351.1Genomic Context describing neighboring genes Neighboring gene similar to RING finger protein 33 Neighboring gene tripartite motif containing 60 Neighboring gene kelch-like family member 2 Neighboring gene U6 spliceosomal RNA Neighboring gene methylsterol monooxygenase 1

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables protein homodimerization activity IEA
Inferred from Electronic Annotation
more info
 
enables protein homodimerization activity ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
NOT located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
NOT located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
located_in endosome ISO
Inferred from Sequence Orthology
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in late endosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in late endosome ISO
Inferred from Sequence Orthology
more info
 
is_active_in lysosomal membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in lysosomal membrane ISO
Inferred from Sequence Orthology
more info
 
located_in lysosome ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
NOT located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in perinuclear region of cytoplasm ISO
Inferred from Sequence Orthology
more info
 
NOT located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001014141.1NP_001014163.1  transmembrane protein 192

    See identical proteins and their annotated locations for NP_001014163.1

    Status: PROVISIONAL

    Source sequence(s)
    BC086402
    UniProtKB/Swiss-Prot
    Q5U1Y0
    Conserved Domains (1) summary
    pfam14802
    Location:26259
    TMEM192; TMEM192 family

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051351.1 Reference mRatBN7.2 Primary Assembly

    Range
    24740166..24760994 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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