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C3h11orf91 similar to human chromosome 11 open reading frame 91 [ Rattus norvegicus (Norway rat) ]

Gene ID: 362175, updated on 5-Mar-2024

Summary

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Official Symbol
C3h11orf91provided by RGD
Official Full Name
similar to human chromosome 11 open reading frame 91provided by RGD
Primary source
RGD:1563222
See related
Ensembl:ENSRNOG00000010963 AllianceGenome:RGD:1563222
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1563222
Summary
Orthologous to human C11orf91 (chromosome 11 open reading frame 91). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Spleen (RPKM 25.0), Lung (RPKM 25.0) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See C3h11orf91 in Genome Data Viewer
Location:
3q32
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (110934488..110941511)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (90479196..90486592)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (94030566..94037890)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene small Cajal body-specific RNA 21 Neighboring gene F-box protein 3 Neighboring gene RIKEN cDNA D430041D05 gene like Neighboring gene CD59b molecule Neighboring gene homeodomain interacting protein kinase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein C11orf91 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108585.1 → NP_001102055.1  uncharacterized protein C11orf91 homolog

    See identical proteins and their annotated locations for NP_001102055.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473949
    UniProtKB/TrEMBL
    A6HNT5, D4A0Z9
    Related
    ENSRNOP00000014767.5, ENSRNOT00000014767.6
    Conserved Domains (1) summary
    pfam17669
    Location:8 → 194
    DUF5529; Family of unknown function (DUF5529)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    110934488..110941511
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039105441.2 → XP_038961369.1  uncharacterized protein C11orf91 homolog isoform X1

    UniProtKB/TrEMBL
    A6HNT5, D4A0Z9
    Conserved Domains (1) summary
    pfam17669
    Location:8 → 194
    DUF5529; Family of unknown function (DUF5529)

  2. XM_039105442.2 → XP_038961370.1  uncharacterized protein C11orf91 homolog isoform X1

    UniProtKB/TrEMBL
    A6HNT5, D4A0Z9
    Conserved Domains (1) summary
    pfam17669
    Location:8 → 194
    DUF5529; Family of unknown function (DUF5529)

  3. XM_017591901.3 → XP_017447390.1  uncharacterized protein C11orf91 homolog isoform X1

    UniProtKB/TrEMBL
    A6HNT5, D4A0Z9
    Conserved Domains (1) summary
    pfam17669
    Location:8 → 194
    DUF5529; Family of unknown function (DUF5529)

  4. XM_039105443.2 → XP_038961371.1  uncharacterized protein C11orf91 homolog isoform X1

    UniProtKB/TrEMBL
    A6HNT5, D4A0Z9
    Conserved Domains (1) summary
    pfam17669
    Location:8 → 194
    DUF5529; Family of unknown function (DUF5529)

  5. XM_039105445.2 → XP_038961373.1  uncharacterized protein C11orf91 homolog isoform X1

    UniProtKB/TrEMBL
    A6HNT5, D4A0Z9
    Conserved Domains (1) summary
    pfam17669
    Location:8 → 194
    DUF5529; Family of unknown function (DUF5529)
Nucleotide Protein Strain
Heading Accession and Version

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