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Rnase1 ribonuclease A family member 1, pancreatic [ Rattus norvegicus (Norway rat) ]

Gene ID: 364304, updated on 13-Aug-2019

Summary

Official Symbol
Rnase1provided by RGD
Official Full Name
ribonuclease A family member 1, pancreaticprovided by RGD
Primary source
RGD:3574
See related
Ensembl:ENSRNOG00000057266
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Rib1
Summary
catalyzes the hydrolysis of RNA phosphodiester bonds [RGD, Feb 2006]
Expression
Biased expression in Spleen (RPKM 2331.6) and Liver (RPKM 722.0) See more

Genomic context

See Rnase1 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
2
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) Unplaced Scaffold NW_007906778.1 (56808..58359, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 15 NC_005114.3 (31897124..31898675, complement)

NW_007906778.1Genomic Context describing neighboring genes Neighboring gene histone H3.3-like Neighboring gene ribonuclease K6-like Neighboring gene hypothetical LOC100362868 Neighboring gene epididymal secretory protein E3-beta-like

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
endonuclease activity IEA
Inferred from Electronic Annotation
more info
 
lyase activity IEA
Inferred from Electronic Annotation
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
ribonuclease activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ribonuclease activity ISO
Inferred from Sequence Orthology
more info
PubMed 
Process Evidence Code Pubs
RNA phosphodiester bond hydrolysis IEA
Inferred from Electronic Annotation
more info
 
RNA phosphodiester bond hydrolysis ISO
Inferred from Sequence Orthology
more info
PubMed 
NOT defense response to virus ISO
Inferred from Sequence Orthology
more info
PubMed 
nucleic acid phosphodiester bond hydrolysis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
extracellular region IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
ribonuclease pancreatic beta-type
Names
RL1
RNase 1 gamma
RNase A
pancreatic ribonuclease
ribonuclease 1 pancreatic
ribonuclease RNase A family 1
ribonuclease, RNase A family, 1 (pancreatic)
NP_001025075.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001029904.1NP_001025075.1  ribonuclease pancreatic beta-type precursor

    Status: PROVISIONAL

    Source sequence(s)
    AABR03095655
    Related
    ENSRNOP00000070615.1, ENSRNOT00000084296.1
    Conserved Domains (1) summary
    smart00092
    Location:29152
    RNAse_Pc; Pancreatic ribonuclease

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NW_007906778.1 Reference Rnor_6.0 Primary Assembly

    Range
    56808..58359 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000083.1 Alternate Rn_Celera

    Range
    24679524..24681067 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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