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Palldl1 palladin-like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 364558, updated on 5-Jun-2021

Summary

Symbol
Palldl1provided by RGD
Full Name
palladin-like 1provided by RGD
Primary source
RGD:1359390
See related
Ensembl:ENSRNOG00000042312
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Palld
Expression
Biased expression in Heart (RPKM 452.0) and Muscle (RPKM 395.5) See more
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Genomic context

See Palldl1 in Genome Data Viewer
Location:
16p12
Exon count:
8
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (27981315..28143129)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (31349140..31390340)

Chromosome 16 - NC_051351.1Genomic Context describing neighboring genes Neighboring gene probable ATP-dependent RNA helicase DDX60 Neighboring gene uncharacterized LOC103693929 Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene DEXD/H-box helicase 60 Neighboring gene uncharacterized LOC120097508 Neighboring gene palladin, cytoskeletal associated protein Neighboring gene uncharacterized LOC120097383 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General protein information

Preferred Names
palladin
Names
palladin, cytoskeletal associated protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051351.1 Reference mRatBN7.2 Primary Assembly

    Range
    27981315..28143129
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039095176.1XP_038951104.1  palladin isoform X2

    Conserved Domains (3) summary
    pfam00191
    Location:311369
    Annexin
    cd00096
    Location:278281
    Ig; Ig strand A [structural motif]
    cl11960
    Location:278311
    Ig; Immunoglobulin domain
  2. XM_039095175.1XP_038951103.1  palladin isoform X1

    Conserved Domains (2) summary
    cd00096
    Location:278281
    Ig; Ig strand A [structural motif]
    cl11960
    Location:278312
    Ig; Immunoglobulin domain
  3. XM_039095177.1XP_038951105.1  palladin isoform X3

    Conserved Domains (2) summary
    cd00096
    Location:278281
    Ig; Ig strand A [structural motif]
    cl11960
    Location:278311
    Ig; Immunoglobulin domain
  4. XM_039095179.1XP_038951107.1  palladin isoform X5

    Conserved Domains (2) summary
    cd00096
    Location:278281
    Ig; Ig strand A [structural motif]
    cl11960
    Location:278310
    Ig; Immunoglobulin domain
  5. XM_039095181.1XP_038951109.1  palladin isoform X6

    Conserved Domains (2) summary
    cd00096
    Location:278281
    Ig; Ig strand A [structural motif]
    cl11960
    Location:278317
    Ig; Immunoglobulin domain
  6. XM_039095178.1XP_038951106.1  palladin isoform X4

    Conserved Domains (2) summary
    cd00096
    Location:278281
    Ig; Ig strand A [structural motif]
    cl11960
    Location:278311
    Ig; Immunoglobulin domain
  7. XM_039095182.1XP_038951110.1  palladin isoform X6

    Conserved Domains (2) summary
    cd00096
    Location:278281
    Ig; Ig strand A [structural motif]
    cl11960
    Location:278317
    Ig; Immunoglobulin domain

RNA

  1. XR_005494984.1 RNA Sequence

  2. XR_005494985.1 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001014237.1: Suppressed sequence

    Description
    NM_001014237.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from human: PALLD (GeneID:23022).
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