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Rtf1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) [ Rattus norvegicus (Norway rat) ]

Gene ID: 366169, updated on 5-Jun-2021

Summary

Official Symbol
Rtf1provided by RGD
Official Full Name
Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)provided by RGD
Primary source
RGD:1310654
See related
Ensembl:ENSRNOG00000005183
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Gtl7
Expression
Biased expression in Spleen (RPKM 54.2), Adrenal (RPKM 53.1) and 9 other tissues See more
Orthologs
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Genomic context

See Rtf1 in Genome Data Viewer
Location:
3q35
Exon count:
18
Annotation release Status Assembly Chr Location
108 current mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (106659363..106718970)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (111478350..111537941)

Chromosome 3 - NC_051338.1Genomic Context describing neighboring genes Neighboring gene Opa interacting protein 5 Neighboring gene nucleolar and spindle associated protein 1 Neighboring gene 40S ribosomal protein S20 pseudogene Neighboring gene NADH:ubiquinone oxidoreductase complex assembly factor 1 Neighboring gene inositol-trisphosphate 3-kinase A Neighboring gene leukocyte receptor tyrosine kinase

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables RNA polymerase II C-terminal domain phosphoserine binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables molecular_function ND
No biological Data available
more info
 
enables single-stranded DNA binding ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
part_of Cdc73/Paf1 complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of Cdc73/Paf1 complex ISO
Inferred from Sequence Orthology
more info
 
is_active_in cellular_component ND
No biological Data available
more info
 
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
RNA polymerase-associated protein RTF1 homolog
Names
gene trap locus 7

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108958.1NP_001102428.1  RNA polymerase-associated protein RTF1 homolog

    See identical proteins and their annotated locations for NP_001102428.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473949
    UniProtKB/TrEMBL
    D3ZLH8
    Related
    ENSRNOP00000053231.2, ENSRNOT00000056392.2
    Conserved Domains (1) summary
    pfam03126
    Location:78176
    Plus-3; Plus-3 domain

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mRatBN7.2 Primary Assembly

Genomic

  1. NC_051338.1 Reference mRatBN7.2 Primary Assembly

    Range
    106659363..106718970
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006234783.2XP_006234845.1  RNA polymerase-associated protein RTF1 homolog isoform X1

    Conserved Domains (2) summary
    COG5296
    Location:194628
    COG5296; Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription]
    pfam03126
    Location:364464
    Plus-3; Plus-3 domain
  2. XM_039105599.1XP_038961527.1  RNA polymerase-associated protein RTF1 homolog isoform X2

    Conserved Domains (2) summary
    COG5296
    Location:3437
    COG5296; Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription]
    pfam03126
    Location:173273
    Plus-3; Plus-3 domain
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