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atp11c ATPase phospholipid transporting 11C [ Danio rerio (zebrafish) ]

Gene ID: 368385, updated on 16-Oct-2021

Summary

Official Symbol
atp11cprovided by ZNC
Official Full Name
ATPase phospholipid transporting 11Cprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030616-51
See related
Ensembl:ENSDARG00000036442
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
ATP8B1; fb79h04; si:bz1l9.1; wu:fb79h04
Orthologs
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Genomic context

See atp11c in Genome Data Viewer
Location:
chromosome: 14
Exon count:
32
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (32505441..32631559, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (32165532..32291406, complement)
103 previous assembly Zv9 (GCF_000002035.4) 14 NC_007125.5 (33375320..33529757, complement)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene coagulation factor IXa Neighboring gene MCF.2 cell line derived transforming sequence a Neighboring gene si:ch211-143l19.3 Neighboring gene SRY-box transcription factor 3 Neighboring gene pyrimidinergic receptor P2Y4 Neighboring gene corticotropin releasing hormone receptor 2

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 
enables ATPase-coupled intramembrane lipid transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables ATPase-coupled intramembrane lipid transporter activity IEA
Inferred from Electronic Annotation
more info
 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in phospholipid translocation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within phospholipid translocation IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within phospholipid transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in recycling endosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in trans-Golgi network IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
ATPase phospholipid transporting 11C; phospholipid-transporting ATPase IG
Names
ATPase, Class VI, type 11C
XP_009289452.1
XP_009289454.1
XP_009289455.1
XP_021328509.1
XP_021328510.1
XP_021328511.1
XP_021328512.1
XP_021336870.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    32505441..32631559 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009291180.3XP_009289455.1  phospholipid-transporting ATPase IG isoform X4

    Conserved Domains (5) summary
    TIGR01652
    Location:401075
    ATPase-Plipid; phospholipid-translocating P-type ATPase, flippase
    pfam13246
    Location:466578
    Cation_ATPase; Cation transport ATPase (P-type)
    pfam16209
    Location:3190
    PhoLip_ATPase_N; Phospholipid-translocating ATPase N-terminal
    pfam16212
    Location:8501075
    PhoLip_ATPase_C; Phospholipid-translocating P-type ATPase C-terminal
    cl21460
    Location:819850
    HAD_like; Haloacid Dehalogenase-like Hydrolases
  2. XM_009291179.3XP_009289454.1  phospholipid-transporting ATPase IG isoform X3

    UniProtKB/TrEMBL
    A0A0R4IEB1
    Conserved Domains (5) summary
    TIGR01652
    Location:401075
    ATPase-Plipid; phospholipid-translocating P-type ATPase, flippase
    pfam13246
    Location:466578
    Cation_ATPase; Cation transport ATPase (P-type)
    pfam16209
    Location:3190
    PhoLip_ATPase_N; Phospholipid-translocating ATPase N-terminal
    pfam16212
    Location:8501075
    PhoLip_ATPase_C; Phospholipid-translocating P-type ATPase C-terminal
    cl21460
    Location:819850
    HAD_like; Haloacid Dehalogenase-like Hydrolases
  3. XM_009291177.3XP_009289452.1  phospholipid-transporting ATPase IG isoform X1

    UniProtKB/TrEMBL
    A0A286Y8A8
    Conserved Domains (5) summary
    TIGR01652
    Location:401075
    ATPase-Plipid; phospholipid-translocating P-type ATPase, flippase
    pfam13246
    Location:466578
    Cation_ATPase; Cation transport ATPase (P-type)
    pfam16209
    Location:3190
    PhoLip_ATPase_N; Phospholipid-translocating ATPase N-terminal
    pfam16212
    Location:8501075
    PhoLip_ATPase_C; Phospholipid-translocating P-type ATPase C-terminal
    cl21460
    Location:819850
    HAD_like; Haloacid Dehalogenase-like Hydrolases
  4. XM_021481195.1XP_021336870.1  phospholipid-transporting ATPase IG isoform X2

    Related
    ENSDARP00000052937.6, ENSDART00000052938.7
    Conserved Domains (1) summary
    cd02073
    Location:42982
    P-type_ATPase_APLT_Dnf-like; Aminophospholipid translocases (APLTs), similar to Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2, -10D, -11B, -11C

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394916.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    132145..261168 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021472837.1XP_021328512.1  phospholipid-transporting ATPase IG isoform X4

    Conserved Domains (1) summary
    cd02073
    Location:42982
    P-type_ATPase_APLT_Dnf-like; Aminophospholipid translocases (APLTs), similar to Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2, -10D, -11B, -11C
  2. XM_021472836.1XP_021328511.1  phospholipid-transporting ATPase IG isoform X3

    Conserved Domains (1) summary
    cd02073
    Location:42982
    P-type_ATPase_APLT_Dnf-like; Aminophospholipid translocases (APLTs), similar to Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2, -10D, -11B, -11C
  3. XM_021472834.1XP_021328509.1  phospholipid-transporting ATPase IG isoform X1

    Conserved Domains (1) summary
    cd02073
    Location:42982
    P-type_ATPase_APLT_Dnf-like; Aminophospholipid translocases (APLTs), similar to Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2, -10D, -11B, -11C
  4. XM_021472835.1XP_021328510.1  phospholipid-transporting ATPase IG isoform X2

    Conserved Domains (1) summary
    cd02073
    Location:42982
    P-type_ATPase_APLT_Dnf-like; Aminophospholipid translocases (APLTs), similar to Saccharomyces cerevisiae Dnf1-3p, Drs2p, and human ATP8A2, -10D, -11B, -11C
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