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CyI cytoplasmic actin I [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 373190, updated on 18-Aug-2023

Summary

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Gene symbol
CyI
Gene description
cytoplasmic actin I
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
Also known as
CYIB
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Genomic context

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See CyI in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145610.1 (24700654..24724093)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003578361.1 (172600..174172)

NW_022145610.1Genomic Context describing neighboring genes Neighboring gene heat shock 70 kDa protein IV-like Neighboring gene kinesin II-accessory 115 kDa polypeptide Neighboring gene actin, cytoskeletal 1A Neighboring gene actin-15B-like Neighboring gene zinc finger protein 90 Neighboring gene suppressor of SWI4 1 homolog Neighboring gene adenosine receptor A2b-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The chromosomal arrangement of two linked actin genes in the sea urchin S. purpuratus. Schuler MA, et al. Nucleic Acids Res, 1981 Feb 11. PMID 6894331, Free PMC Article
  2. Analysis of the DNA binding proteins interacting with specific upstream sequences of the S. purpuratus CyI actin gene. Ganster R, et al. Mol Reprod Dev, 1992 Dec. PMID 1472371
  3. Actin polymerization controls the activation of multidrug efflux at fertilization by translocation and fine-scale positioning of ABCB1 on microvilli. Whalen K, et al. Mol Biol Cell, 2012 Sep. PMID 22855533, Free PMC Article
  4. DNA sequence of two linked actin genes of sea urchin. Schuler MA, et al. Mol Cell Biol, 1983 Mar. PMID 6302475, Free PMC Article
  5. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Data indicate that inhibition of actin polymerization or bundle formation prevents tip localization, resulting in the patching of ABCB1a at the cell surface and decreased efflux activity.
    Title: Actin polymerization controls the activation of multidrug efflux at fertilization by translocation and fine-scale positioning of ABCB1 on microvilli.
Submit: New GeneRIF Correction

General gene information

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Markers

General protein information

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Preferred Names
actin, cytoskeletal 1B
Names
actin 2
actin, cytoskeletal IB

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001037157.2 → NP_001032234.2  actin, cytoskeletal 1B

    See identical proteins and their annotated locations for NP_001032234.2

    Status: VALIDATED

    Source sequence(s)
    AAGJ06000004
    UniProtKB/Swiss-Prot
    P53472, P69005
    Conserved Domains (1) summary
    PTZ00281
    Location:1 → 376
    PTZ00281; actin; Provisional

RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145610.1 Reference Spur_5.0 Primary Assembly

    Range
    24700654..24724093
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030997000.1 → XP_030852860.1  actin, cytoskeletal 1B isoform X1

    UniProtKB/Swiss-Prot
    P53472, P69005
    Conserved Domains (1) summary
    PTZ00281
    Location:1 → 376
    PTZ00281; actin; Provisional

  2. XM_011665467.2 → XP_011663769.1  actin, cytoskeletal 1B isoform X1

    See identical proteins and their annotated locations for XP_011663769.1

    UniProtKB/Swiss-Prot
    P53472, P69005
    Conserved Domains (1) summary
    PTZ00281
    Location:1 → 376
    PTZ00281; actin; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P53473.1 GenPept UniProtKB/Swiss-Prot:P53473

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.