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Endo16 calcium-binding protein [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 373279, updated on 22-May-2022

Summary

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Gene symbol
Endo16
Gene description
calcium-binding protein
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145602.1 (2179815..2192280, complement)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003576993.1 (571916..584195)

NW_022145602.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115925142 Neighboring gene neurotrypsin Neighboring gene BLOC-1-related complex subunit 5 Neighboring gene transmembrane protein 216

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolutionary analysis of the well characterized endo16 promoter reveals substantial variation within functional sites. Balhoff JP, et al. Proc Natl Acad Sci U S A, 2005 Jun 14. PMID 15937122, Free PMC Article
  2. Alternative splicing of the Endo16 transcript produces differentially expressed mRNAs during sea urchin gastrulation. Godin RE, et al. Dev Biol, 1996 Oct 10. PMID 8873760
  3. Complexity and organization of DNA-protein interactions in the 5'-regulatory region of an endoderm-specific marker gene in the sea urchin embryo. Yuh CH, et al. Mech Dev, 1994 Aug. PMID 7811639
  4. Endo16, a lineage-specific protein of the sea urchin embryo, is first expressed just prior to gastrulation. Nocente-McGrath C, et al. Dev Biol, 1989 Nov. PMID 2680683
  5. Endo16, a large multidomain protein found on the surface and ECM of endodermal cells during sea urchin gastrulation, binds calcium. Soltysik-Española M, et al. Dev Biol, 1994 Sep. PMID 8088452

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
protein ENDO16
Names
endoderm-specific marker
extracellular protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_214519.1 → NP_999684.1  protein ENDO16 precursor

    See identical proteins and their annotated locations for NP_999684.1

    Status: PROVISIONAL

    Source sequence(s)
    L34680
    UniProtKB/TrEMBL
    Q26644
    Conserved Domains (1) summary
    cd08523
    Location:34 → 172
    Reeler_cohesin_like; Domains similar to the eukaryotic reeler domain and bacterial cohesins

RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145602.1 Reference Spur_5.0 Primary Assembly

    Range
    2179815..2192280 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P13665.2 GenPept UniProtKB/Swiss-Prot:P13665

Gene LinkOut

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Molecular Biology Databases