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CG9344 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 37372, updated on 10-May-2024

Summary

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Official Symbol
CG9344provided by FlyBase
Primary source
FLYBASE:FBgn0034564
Locus tag
Dmel_CG9344
See related
AllianceGenome:FB:FBgn0034564
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
BcDNA:RE43665; Dmel\CG9344
Summary
Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome and maturation of SSU-rRNA. Predicted to be part of sno(s)RNA-containing ribonucleoprotein complex; spliceosomal complex; and spliceosomal snRNP complex. Predicted to be active in P-body and nucleolus. Is expressed in organism. Orthologous to human LSM6 (LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See CG9344 in Genome Data Viewer
Location:
57B5-57B5; 2-92 cM
Exon count:
2
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (20977056..20977600)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (16864561..16865105)

Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Altered levels of hsromega lncRNAs further enhance Ras signaling during ectopically activated Ras induced R7 differentiation in Drosophila. Ray M, et al. Gene Expr Patterns, 2019 Sep. PMID 31096022
  2. Zinc Finger RNA-Binding Protein Zn72D Regulates ADAR-Mediated RNA Editing in Neurons. Sapiro AL, et al. Cell Rep, 2020 May 19. PMID 32433963, Free PMC Article
  3. Biochemical identification of new proteins involved in splicing repression at the Drosophila P-element exonic splicing silencer. Horan L, et al. Genes Dev, 2015 Nov 1. PMID 26545814, Free PMC Article
  4. Transcriptional signature of an adult brain tumor in Drosophila. Loop T, et al. BMC Genomics, 2004 Apr 16. PMID 15090076, Free PMC Article
  5. Striking circadian neuron diversity and cycling of Drosophila alternative splicing. Wang Q, et al. Elife, 2018 Jun 4. PMID 29863472, Free PMC Article

See all (37) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA binding ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
  
involved_in mRNA splicing, via spliceosome ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
involved_in maturation of SSU-rRNA IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in P-body IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of U4/U6 x U5 tri-snRNP complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of U6 snRNP IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of U6 snRNP NAS
Non-traceable Author Statement
more info
 PubMed 
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of small nuclear ribonucleoprotein complex ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
part_of sno(s)RNA-containing ribonucleoprotein complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of spliceosomal complex ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein
Names
CG9344-PA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033778.4 Reference assembly

    Range
    20977056..20977600
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_137684.2 → NP_611528.1  uncharacterized protein Dmel_CG9344 [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_611528.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9W2P5
    Related
    FBpp0071449
    Conserved Domains (1) summary
    cd01726
    Location:8 → 73
    LSm6; Like-Sm protein 6
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9W2P5 Q9W2P5

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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