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TBX20 T-box 20 [ Gallus gallus (chicken) ]

Gene ID: 373943, updated on 20-Oct-2021

Summary

Official Symbol
TBX20provided by CGNC
Official Full Name
T-box 20provided by CGNC
Primary source
CGNC:9220
See related
Ensembl:ENSGALG00000032097
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Annotation information
Annotation category: partial on reference assembly
Orthologs
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Genomic context

See TBX20 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
105 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (47152034..47184373)
105 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.1) 2 NC_052574.1 (47199204..47231563)
104 previous assembly GRCg6a (GCF_000002315.5) 2 NC_006089.5 (47177036..47209226)
103 previous assembly Gallus_gallus-5.0 (GCF_000002315.4) 2 NC_006089.4 (47403388..47435573)

Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121109543 Neighboring gene uncharacterized LOC101749729 Neighboring gene dpy-19 like 1 Neighboring gene uncharacterized LOC121109544 Neighboring gene neuropeptide S receptor 1

Genomic regions, transcripts, and products

Bibliography

General gene information

Homology

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in aortic valve morphogenesis IEA
Inferred from Electronic Annotation
more info
 
involved_in atrial septum morphogenesis IEA
Inferred from Electronic Annotation
more info
 
involved_in atrioventricular canal development IEA
Inferred from Electronic Annotation
more info
 
involved_in blood circulation IEA
Inferred from Electronic Annotation
more info
 
involved_in branching involved in blood vessel morphogenesis IEA
Inferred from Electronic Annotation
more info
 
involved_in cardiac chamber formation IEA
Inferred from Electronic Annotation
more info
 
involved_in cardiac muscle tissue morphogenesis IEA
Inferred from Electronic Annotation
more info
 
involved_in cardiac right ventricle morphogenesis IEA
Inferred from Electronic Annotation
more info
 
involved_in cell fate specification IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in cell migration involved in heart development IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in cell proliferation involved in heart valve development IDA
Inferred from Direct Assay
more info
PubMed 
involved_in dorsal/ventral pattern formation IEA
Inferred from Electronic Annotation
more info
 
involved_in embryonic heart tube elongation IEA
Inferred from Electronic Annotation
more info
 
involved_in endocardial cushion formation IEA
Inferred from Electronic Annotation
more info
 
involved_in foramen ovale closure IEA
Inferred from Electronic Annotation
more info
 
involved_in heart looping IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in mesenchymal cell development IEA
Inferred from Electronic Annotation
more info
 
involved_in muscle contraction IEA
Inferred from Electronic Annotation
more info
 
involved_in negative regulation of SMAD protein complex assembly IEA
Inferred from Electronic Annotation
more info
 
involved_in negative regulation of gene expression IDA
Inferred from Direct Assay
more info
PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 
involved_in neuron migration IEA
Inferred from Electronic Annotation
more info
 
involved_in outflow tract septum morphogenesis IEA
Inferred from Electronic Annotation
more info
 
involved_in pericardium morphogenesis IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of BMP signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of cardiac muscle cell proliferation IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of cell migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of epithelial to mesenchymal transition IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of gene expression IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 
involved_in pulmonary valve formation IEA
Inferred from Electronic Annotation
more info
 
involved_in pulmonary vein morphogenesis IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in tricuspid valve development IEA
Inferred from Electronic Annotation
more info
 
involved_in vasculogenesis IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in visceral motor neuron differentiation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
T-box transcription factor TBX20
Names
T-box protein 20
cTbx20

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_204144.2NP_989475.1  T-box transcription factor TBX20

    See identical proteins and their annotated locations for NP_989475.1

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000037
    UniProtKB/Swiss-Prot
    Q8UW76
    Related
    ENSGALP00000052363.1, ENSGALT00000064440.2
    Conserved Domains (1) summary
    cd00182
    Location:93285
    TBOX; T-box DNA binding domain of the T-box family of transcriptional regulators. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA ...

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    47152034..47184373
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    47199204..47231563
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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