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PTPRG protein tyrosine phosphatase, receptor type G [ Gallus gallus (chicken) ]

Gene ID: 374208, updated on 6-Jun-2024

Summary

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Symbol
PTPRGprovided by CGNC
Full Name
protein tyrosine phosphatase, receptor type Gprovided by CGNC
Primary source
CGNC:5422
See related
Ensembl:ENSGALG00010021043
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See PTPRG in Genome Data Viewer
Location:
chromosome: 12
Exon count:
30
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 12 NC_052543.1 (12908061..13282909)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 12 NC_052584.1 (12941916..13316804)

Chromosome 12 - NC_052543.1Genomic Context describing neighboring genes Neighboring gene C3orf67 homolog Neighboring gene fragile histidine triad Neighboring gene uncharacterized LOC121106601 Neighboring gene uncharacterized LOC121106598 Neighboring gene microRNA 1550 Neighboring gene uncharacterized LOC121106600 Neighboring gene C3orf14 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Receptor tyrosine phosphatase PTPγ is a regulator of spinal cord neurogenesis. Hashemi H, et al. Mol Cell Neurosci, 2011 Feb. PMID 21112398, Free PMC Article
  2. Analysis of chicken embryonic gonad expressed sequenced tags. Shin JH, et al. Anim Genet, 2006 Feb. PMID 16441308
  3. Development of a chicken 5 K microarray targeted towards immune function. Smith J, et al. BMC Genomics, 2006 Mar 13. PMID 16533398, Free PMC Article
  4. Expressed sequence tag analysis of Eimeria-stimulated intestinal intraepithelial lymphocytes in chickens. Min W, et al. Mol Biotechnol, 2005 Jun. PMID 15920284
  5. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. PTPgamma therefore regulates neurogenesis during a window of spinal cord development
    Title: Receptor tyrosine phosphatase PTPγ is a regulator of spinal cord neurogenesis.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
receptor-type tyrosine-protein phosphatase gamma
Names
R-PTP-gamma
protein-tyrosine phosphatase gamma
NP_001384360.1
XP_046755716.1
XP_046781914.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001397431.1 → NP_001384360.1  receptor-type tyrosine-protein phosphatase gamma precursor

    Status: VALIDATED

    Source sequence(s)
    AM064271, BU106810, BU245296, BU250654, BU300419, BU415611, BU417886, BU478851, CD740415, CD740441, CV859109, JAENSK010000252, U38349
    UniProtKB/Swiss-Prot
    Q98936

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052543.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    12908061..13282909
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046899760.1 → XP_046755716.1  receptor-type tyrosine-protein phosphatase gamma isoform X1

    UniProtKB/Swiss-Prot
    Q98936
    Related
    ENSGALP00010030117.1, ENSGALT00010050926.1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052584.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    12941916..13316804
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046925958.1 → XP_046781914.1  receptor-type tyrosine-protein phosphatase gamma isoform X1

    UniProtKB/Swiss-Prot
    Q98936

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_204314.2: Suppressed sequence

    Description
    NM_204314.2: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q98936.1 GenPept UniProtKB/Swiss-Prot:Q98936

Gene LinkOut

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Molecular Biology Databases
Research Materials