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atlas [ Drosophila melanogaster (fruit fly) ]

Gene ID: 37689, updated on 10-May-2024

Summary

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Official Symbol
atlasprovided by FlyBase
Primary source
FLYBASE:FBgn0034841
Locus tag
Dmel_CG13541
See related
AllianceGenome:FB:FBgn0034841
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
atl; CG13541; Dmel\CG13541
Orthologs
all
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Genomic context

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See atlas in Genome Data Viewer
Location:
59D4-59D5; 2-102 cM
Exon count:
2
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (23284227..23285821)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (19171750..19173344)

Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene orientation disruptor Neighboring gene uncharacterized protein Neighboring gene long non-coding RNA:CR44783 Neighboring gene Proteasome beta5 subunit-related 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Heterologous expression of naturally evolved putative de novo proteins with chaperones. Eicholt LA, et al. Protein Sci, 2022 Aug. PMID 35900020, Free PMC Article
  2. Ocnus is essential for male germ cell development in Drosophila melanogaster. Zheng Y, et al. Insect Mol Biol, 2018 Oct. PMID 29732657
  3. A putative de novo evolved gene required for spermatid chromatin condensation in Drosophila melanogaster. Rivard EL, et al. PLoS Genet, 2021 Sep. PMID 34478447, Free PMC Article
  4. A protein interaction map of Drosophila melanogaster. Giot L, et al. Science, 2003 Dec 5. PMID 14605208
  5. A genome-wide Drosophila screen for heat nociception identifies α2δ3 as an evolutionarily conserved pain gene. Neely GG, et al. Cell, 2010 Nov 12. PMID 21074052, Free PMC Article

See all (21) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in sperm DNA condensation IMP
Inferred from Mutant Phenotype
more info
 PubMed 

General protein information

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Preferred Names
atlas
Names
CG13541-PA
CG13541-PB
atlas-PA
atlas-PB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033778.4 Reference assembly

    Range
    23284227..23285821
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001299833.1 → NP_001286762.1  atlas, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001286762.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9W1S6

  2. NM_137931.3 → NP_611775.1  atlas, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_611775.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9W1S6
    Related
    FBpp0071910
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9W1S6 Q9W1S6

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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