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LINC00317 long intergenic non-protein coding RNA 317 [ Homo sapiens (human) ]

Gene ID: 378828, updated on 10-Oct-2023

Summary

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Official Symbol
LINC00317provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 317provided by HGNC
Primary source
HGNC:HGNC:23126
See related
Ensembl:ENSG00000238265 AllianceGenome:HGNC:23126
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PRED89; C21orf117; NCRNA00317
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Genomic context

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See LINC00317 in Genome Data Viewer
Location:
21q21.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (21723293..21737319, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (20089389..20103412, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (23095613..23109639, complement)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124905057 Neighboring gene neural cell adhesion molecule 2 Neighboring gene Sharpr-MPRA regulatory region 4841 Neighboring gene Sharpr-MPRA regulatory region 4883 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:22737134-22737706 Neighboring gene long intergenic non-protein coding RNA 1425 Neighboring gene MPRA-validated peak4378 silencer Neighboring gene MPRA-validated peak4379 silencer Neighboring gene Sharpr-MPRA regulatory region 9223 Neighboring gene long intergenic non-protein coding RNA 1687 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:23448619-23449219

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038872.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC009878, BF026848
    Related
    ENST00000419069.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    21723293..21737319 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    20089389..20103412 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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