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Lrrc24 leucine rich repeat containing 24 [ Mus musculus (house mouse) ]

Gene ID: 378937, updated on 23-Jun-2021

Summary

Official Symbol
Lrrc24provided by MGI
Official Full Name
leucine rich repeat containing 24provided by MGI
Primary source
MGI:MGI:3605040
See related
Ensembl:ENSMUSG00000033707
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
6430402H13Rik
Expression
Broad expression in frontal lobe adult (RPKM 13.7), cerebellum adult (RPKM 13.2) and 24 other tissues See more
Orthologs
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Genomic context

See Lrrc24 in Genome Data Viewer
Location:
15; 15 D3
Exon count:
6
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (76599476..76606373, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (76715276..76722173, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (76545706..76552603, complement)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene major facilitator superfamily domain containing 3 Neighboring gene RecQ protein-like 4 Neighboring gene RIKEN cDNA C030006K11 gene Neighboring gene leucine rich repeat containing 14 Neighboring gene Rho GTPase activating protein 39 Neighboring gene predicted gene, 17271 Neighboring gene predicted gene, 41350

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within positive regulation of synapse assembly IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
is_active_in extracellular matrix IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
leucine-rich repeat-containing protein 24

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_198119.2NP_932787.1  leucine-rich repeat-containing protein 24 precursor

    See identical proteins and their annotated locations for NP_932787.1

    Status: PROVISIONAL

    Source sequence(s)
    AK078176
    Consensus CDS
    CCDS27590.1
    UniProtKB/Swiss-Prot
    Q8BHA1
    Related
    ENSMUSP00000061906.5, ENSMUST00000049956.5
    Conserved Domains (7) summary
    smart00082
    Location:212265
    LRRCT; Leucine rich repeat C-terminal domain
    smart00410
    Location:274370
    IG_like; Immunoglobulin like
    cd00116
    Location:60166
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:6183
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:131171
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:84142
    LRR_8; Leucine rich repeat
    cl11960
    Location:267361
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    76599476..76606373 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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