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ocm4.5.S oncomodulin 4 gene 5 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379206, updated on 11-Apr-2024

Summary

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Official Symbol
ocm4.5.S
Official Full Name
oncomodulin 4 gene 5 S homeolog
Primary source
Xenbase:XB-GENE-17334862
Locus tag
XELAEV_18047610mg
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
oncm; oncomodulin; parvalbumin
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Genomic context

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Location:
chromosome: 9_10S
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (96551389..96556136)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (89904663..89909410)

Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene oncomodulin 4 gene 1 S homeolog Neighboring gene oncomodulin 4 gene 3 S homeolog Neighboring gene oncomodulin 4 gene 4 S homeolog Neighboring gene oncomodulin 4 gene 6 S homeolog Neighboring gene oncomodulin S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC53945

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Parvalbumin beta-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086050.2 → NP_001079519.1  Parvalbumin beta-like

    See identical proteins and their annotated locations for NP_001079519.1

    Status: PROVISIONAL

    Source sequence(s)
    BC043986
    UniProtKB/Swiss-Prot
    P05940
    UniProtKB/TrEMBL
    A0A974BVJ1, Q7ZY39
    Conserved Domains (2) summary
    cd00051
    Location:44 → 108
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam13499
    Location:44 → 107
    EF-hand_7; EF-hand domain pair

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    96551389..96556136
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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