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Rdh18-ps retinol dehydrogenase 18, pseudogene [ Mus musculus (house mouse) ]

Gene ID: 380674, updated on 24-Jul-2021

Summary

Official Symbol
Rdh18-psprovided by MGI
Official Full Name
retinol dehydrogenase 18, pseudogeneprovided by MGI
Primary source
MGI:MGI:2687008
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rdh18
Expression
Biased expression in liver adult (RPKM 13.0), liver E18 (RPKM 3.1) and 5 other tissues See more
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Genomic context

See Rdh18-ps in Genome Data Viewer
Location:
10; 10 D3
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (127660085..127682434)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (127824216..127846565)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (127261340..127280994)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene retinol dehydrogenase 9 Neighboring gene retinol dehydrogenase 16 Neighboring gene retinol dehydrogenase 19 Neighboring gene RDH16 family member 2 Neighboring gene predicted gene, 31091

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Other Names

  • cis-retinol/3alpha-hydroxysterol short-chain dehydrogenase
  • cis-retinol/3alpha-hydroxysterol short-chain dehydrogenasecis-retinol/3alpha-hydroxysterol short-chain dehydrogenasecis-retinol/3alpha-hydroxysterol short-chain dehydrogenase

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_037604.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC131690

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    127660085..127682434
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_007059.1: Suppressed sequence

    Description
    NG_007059.1: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.
  2. NG_012315.1: Suppressed sequence

    Description
    NG_012315.1: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.
  3. NM_199313.1: Suppressed sequence

    Description
    NM_199313.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
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