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Ms4a12 membrane-spanning 4-domains, subfamily A, member 12 [ Mus musculus (house mouse) ]

Gene ID: 381213, updated on 5-Mar-2024

Summary

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Official Symbol
Ms4a12provided by MGI
Official Full Name
membrane-spanning 4-domains, subfamily A, member 12provided by MGI
Primary source
MGI:MGI:2685812
See related
Ensembl:ENSMUSG00000101031 AllianceGenome:MGI:2685812
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm966
Summary
Orthologous to human MS4A12 (membrane spanning 4-domains A12). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in large intestine adult (RPKM 12.0), duodenum adult (RPKM 6.3) and 2 other tissues See more
Orthologs
human all
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Genomic context

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Location:
19 A; 19 8.07 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (11191392..11209846, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (11214028..11232482, complement)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_45565 Neighboring gene membrane-spanning 4-domains, subfamily A, member 19 Neighboring gene membrane-spanning 4-domains, subfamily A, member 13 Neighboring gene RIKEN cDNA 4930526L06 gene Neighboring gene STARR-seq mESC enhancer starr_45566 Neighboring gene STARR-seq mESC enhancer starr_45567 Neighboring gene STARR-positive B cell enhancer ABC_E11022 Neighboring gene membrane-spanning 4-domains, subfamily A, member 1 Neighboring gene STARR-positive B cell enhancer ABC_E3243 Neighboring gene membrane-spanning 4-domains, subfamily A, member 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in cell surface receptor signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
membrane-spanning 4-domains subfamily A member 12

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001374133.1 → NP_001361062.1  membrane-spanning 4-domains subfamily A member 12

    Status: VALIDATED

    Source sequence(s)
    AC134839
    UniProtKB/TrEMBL
    A0A087WSB9
    Related
    ENSMUSP00000140981.2, ENSMUST00000186228.3
    Conserved Domains (1) summary
    pfam04103
    Location:85 → 218
    CD20; CD20-like family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    11191392..11209846 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011247414.1 → XP_011245716.1  membrane-spanning 4-domains subfamily A member 12 isoform X3

    See identical proteins and their annotated locations for XP_011245716.1

  2. XM_006527507.1 → XP_006527570.1  membrane-spanning 4-domains subfamily A member 12 isoform X2

    See identical proteins and their annotated locations for XP_006527570.1

  3. XM_006527506.1 → XP_006527569.1  membrane-spanning 4-domains subfamily A member 12 isoform X1

    See identical proteins and their annotated locations for XP_006527569.1

    Conserved Domains (1) summary
    pfam04103
    Location:85 → 175
    CD20; CD20-like family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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