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Spata6l spermatogenesis associated 6 like [ Mus musculus (house mouse) ]

Gene ID: 381218, updated on 23-Jun-2021

Summary

Official Symbol
Spata6lprovided by MGI
Official Full Name
spermatogenesis associated 6 likeprovided by MGI
Primary source
MGI:MGI:1918036
See related
Ensembl:ENSMUSG00000064202
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AW122618; 4430402I18Rik
Expression
Biased expression in testis adult (RPKM 26.8), duodenum adult (RPKM 4.7) and 6 other tissues See more
Orthologs
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Genomic context

See Spata6l in Genome Data Viewer
Location:
19; 19 C1
Exon count:
16
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (28899836..28945289, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (28917638..28967832, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (28997554..29038644, complement)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 52404 Neighboring gene solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 Neighboring gene eukaryotic translation elongation factor 1 alpha 1 pseudogene Neighboring gene phospholipid phosphatase 6 Neighboring gene phytanoyl-CoA hydroxylase pseudogene Neighboring gene tektin 5 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
enables myosin light chain binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
involved_in spermatogenesis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in sperm connecting piece IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
spermatogenesis associated 6-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001374140.1NP_001361069.1  spermatogenesis associated 6-like protein isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC113961
    Conserved Domains (1) summary
    pfam14909
    Location:7145
    SPATA6; Spermatogenesis-assoc protein 6
  2. NM_001374152.1NP_001361081.1  spermatogenesis associated 6-like protein isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC113961
    Conserved Domains (2) summary
    pfam14909
    Location:191
    SPATA6; Spermatogenesis-assoc protein 6
    pfam15741
    Location:127334
    LRIF1; Ligand-dependent nuclear receptor-interacting factor 1
  3. NM_001374153.1NP_001361082.1  spermatogenesis associated 6-like protein isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC113961
    Conserved Domains (2) summary
    pfam14909
    Location:7131
    SPATA6; Spermatogenesis-assoc protein 6
    pfam15741
    Location:167374
    LRIF1; Ligand-dependent nuclear receptor-interacting factor 1
  4. NM_001374154.1NP_001361083.1  spermatogenesis associated 6-like protein isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC113961
    Related
    ENSMUSP00000132800.2, ENSMUST00000164777.8
    Conserved Domains (2) summary
    pfam14909
    Location:177
    SPATA6; Spermatogenesis-assoc protein 6
    pfam15741
    Location:113320
    LRIF1; Ligand-dependent nuclear receptor-interacting factor 1
  5. NM_198651.2NP_941053.2  spermatogenesis associated 6-like protein isoform 2

    See identical proteins and their annotated locations for NP_941053.2

    Status: VALIDATED

    Source sequence(s)
    AK014471, AK031997
    Consensus CDS
    CCDS37948.1
    UniProtKB/Swiss-Prot
    B2RV46
    UniProtKB/TrEMBL
    Q8BI12
    Related
    ENSMUSP00000025872.7, ENSMUST00000025872.13
    Conserved Domains (2) summary
    pfam14909
    Location:191
    SPATA6; Spermatogenesis-assoc protein 6
    pfam15741
    Location:127334
    LRIF1; Ligand-dependent nuclear receptor-interacting factor 1

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    28899836..28945289 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036161620.1XP_036017513.1  spermatogenesis associated 6-like protein isoform X4

    Conserved Domains (1) summary
    pfam14909
    Location:89143
    SPATA6; Spermatogenesis-assoc protein 6
  2. XM_036161619.1XP_036017512.1  spermatogenesis associated 6-like protein isoform X3

    Related
    ENSMUSP00000123818.2, ENSMUST00000162110.8
    Conserved Domains (1) summary
    pfam14909
    Location:7145
    SPATA6; Spermatogenesis-assoc protein 6
  3. XM_011247274.4XP_011245576.3  spermatogenesis associated 6-like protein isoform X2

    Conserved Domains (2) summary
    pfam14909
    Location:206323
    SPATA6; Spermatogenesis-assoc protein 6
    pfam15741
    Location:359566
    LRIF1; Ligand-dependent nuclear receptor-interacting factor 1
  4. XM_011247272.4XP_011245574.3  spermatogenesis associated 6-like protein isoform X1

    Conserved Domains (2) summary
    pfam14909
    Location:206337
    SPATA6; Spermatogenesis-assoc protein 6
    pfam15741
    Location:373580
    LRIF1; Ligand-dependent nuclear receptor-interacting factor 1
  5. XM_030250980.2XP_030106840.1  spermatogenesis associated 6-like protein isoform X5

    Conserved Domains (2) summary
    pfam14909
    Location:177
    SPATA6; Spermatogenesis-assoc protein 6
    pfam15741
    Location:113320
    LRIF1; Ligand-dependent nuclear receptor-interacting factor 1

RNA

  1. XR_001782595.3 RNA Sequence

  2. XR_001782596.3 RNA Sequence

  3. XR_003952793.2 RNA Sequence

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