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Batf3 basic leucine zipper transcription factor, ATF-like 3 [ Mus musculus (house mouse) ]

Gene ID: 381319, updated on 25-Nov-2021

Summary

Official Symbol
Batf3provided by MGI
Official Full Name
basic leucine zipper transcription factor, ATF-like 3provided by MGI
Primary source
MGI:MGI:1925491
See related
Ensembl:ENSMUSG00000026630
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Snft; 9130211I03Rik
Expression
Broad expression in spleen adult (RPKM 8.6), mammary gland adult (RPKM 6.6) and 25 other tissues See more
Orthologs
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Genomic context

See Batf3 in Genome Data Viewer
Location:
1; 1 H6
Exon count:
3
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (190830611..190841140)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (191098414..191108943)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (192922293..192932822)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene spermatogenesis associated 45 Neighboring gene TatD DNase domain containing 3 Neighboring gene NSL1, MIS12 kinetochore complex component Neighboring gene predicted gene, 46178 Neighboring gene predicted gene, 31640

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Component Evidence Code Pubs
part_of RNA polymerase II transcription regulator complex ISO
Inferred from Sequence Orthology
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
basic leucine zipper transcriptional factor ATF-like 3
Names
B-ATF-3
Jun dimerization protein p21SNFT

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_030060.2NP_084336.1  basic leucine zipper transcriptional factor ATF-like 3

    See identical proteins and their annotated locations for NP_084336.1

    Status: PROVISIONAL

    Source sequence(s)
    AK020278
    Consensus CDS
    CCDS15615.1
    UniProtKB/Swiss-Prot
    Q9D275
    Related
    ENSMUSP00000027943.5, ENSMUST00000027943.6
    Conserved Domains (2) summary
    cd14686
    Location:3182
    bZIP; coiled coil [structural motif]
    cl21462
    Location:2885
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    190830611..190841140
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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