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AB124611 cDNA sequence AB124611 [ Mus musculus (house mouse) ]

Gene ID: 382062, updated on 16-Oct-2021

Summary

Official Symbol
AB124611provided by MGI
Official Full Name
cDNA sequence AB124611provided by MGI
Primary source
MGI:MGI:3043001
See related
Ensembl:ENSMUSG00000057191
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm1706
Expression
Biased expression in spleen adult (RPKM 26.7), mammary gland adult (RPKM 7.9) and 9 other tissues See more
Orthologs
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Genomic context

See AB124611 in Genome Data Viewer
Location:
9; 9 A3
Exon count:
8
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (21437410..21456629)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (21526114..21545333)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (21330721..21349237)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene dynamin 2 Neighboring gene uncharacterized LOC118567667 Neighboring gene microRNA 199a-1 Neighboring gene transmembrane p24 trafficking protein 1 Neighboring gene coactivator-associated arginine methyltransferase 1 Neighboring gene predicted gene, 39303 Neighboring gene Yip1 domain family, member 2 Neighboring gene translocase of inner mitochondrial membrane 29

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 
  • Targeted (3) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
protein HIDE1
Names
HIDE1
highly expressed in immature dendritic cell transcript 1 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001198794.2NP_001185723.2  protein HIDE1 isoform 1 precursor

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer protein (isoform 1).
    Source sequence(s)
    AC163748
    Consensus CDS
    CCDS57661.1
    Related
    ENSMUSP00000083547.6, ENSMUST00000086361.12
    Conserved Domains (1) summary
    pfam17737
    Location:22116
    Ig_C19orf38; Ig domain in C19orf38 (HIDE1)
  2. NM_206536.3NP_996259.3  protein HIDE1 isoform 2 precursor

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an in-frame exon in the 5' coding region, compared to variant 1, and encodes a shorter protein (isoform 2) compared to isoform 1.
    Source sequence(s)
    AC163748
    Consensus CDS
    CCDS22905.2
    Related
    ENSMUSP00000134056.3, ENSMUST00000173769.3
    Conserved Domains (1) summary
    pfam17737
    Location:22116
    Ig_C19orf38; Ig domain in C19orf38 (HIDE1)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    21437410..21456629
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011242566.3XP_011240868.1  protein HIDE1 isoform X5

    Conserved Domains (1) summary
    pfam17737
    Location:26120
    Ig_C19orf38; Ig domain in C19orf38 (HIDE1)
  2. XM_036155092.1XP_036010985.1  protein HIDE1 isoform X1

    Conserved Domains (1) summary
    pfam17737
    Location:26120
    Ig_C19orf38; Ig domain in C19orf38 (HIDE1)
  3. XM_036155093.1XP_036010986.1  protein HIDE1 isoform X3

    Conserved Domains (1) summary
    pfam17737
    Location:26120
    Ig_C19orf38; Ig domain in C19orf38 (HIDE1)
  4. XM_011242567.4XP_011240869.1  protein HIDE1 isoform X2

    Conserved Domains (1) summary
    pfam17737
    Location:26120
    Ig_C19orf38; Ig domain in C19orf38 (HIDE1)
  5. XM_030244431.2XP_030100291.1  protein HIDE1 isoform X4

    Conserved Domains (1) summary
    pfam17737
    Location:26120
    Ig_C19orf38; Ig domain in C19orf38 (HIDE1)
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