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Tvp23a trans-golgi network vesicle protein 23A [ Mus musculus (house mouse) ]

Gene ID: 383103, updated on 23-Jun-2021

Summary

Official Symbol
Tvp23aprovided by MGI
Official Full Name
trans-golgi network vesicle protein 23Aprovided by MGI
Primary source
MGI:MGI:3665441
See related
Ensembl:ENSMUSG00000050908
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Fam1; Fam18a
Expression
Ubiquitous expression in whole brain E14.5 (RPKM 13.8), CNS E18 (RPKM 13.4) and 28 other tissues See more
Orthologs
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Genomic context

See Tvp23a in Genome Data Viewer
Location:
16; 16 A1
Exon count:
9
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (10237397..10265251, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (10419533..10447390, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (10420650..10447443, complement)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 30724 Neighboring gene tektin 5 Neighboring gene predicted gene, 41419 Neighboring gene nucleotide binding protein 1 Neighboring gene predicted gene, 41420 Neighboring gene class II transactivator Neighboring gene uncharacterized LOC115488669

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in protein secretion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in integral component of Golgi membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
Golgi apparatus membrane protein TVP23 homolog A
Names
family with sequence similarity 18, member A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001013778.2NP_001013800.1  Golgi apparatus membrane protein TVP23 homolog A isoform 1

    See identical proteins and their annotated locations for NP_001013800.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    AC122352
    Consensus CDS
    CCDS27949.1
    UniProtKB/TrEMBL
    Q6NVH0
    Related
    ENSMUSP00000052922.7, ENSMUST00000051118.7
    Conserved Domains (1) summary
    pfam05832
    Location:39180
    DUF846; Eukaryotic protein of unknown function (DUF846)
  2. NM_001359069.1NP_001345998.1  Golgi apparatus membrane protein TVP23 homolog A isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and has multiple coding region differences, compared to variant 1. These differences cause translation initiation at a alternate AUG and result in an isoform (2) with a shorter N-terminus, compared to isoform 1.
    Source sequence(s)
    AC122352
    Conserved Domains (1) summary
    pfam05832
    Location:30171
    DUF846; Eukaryotic protein of unknown function (DUF846)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    10237397..10265251 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006522315.5XP_006522378.1  Golgi apparatus membrane protein TVP23 homolog A isoform X2

    Conserved Domains (1) summary
    pfam05832
    Location:30189
    DUF846; Eukaryotic protein of unknown function (DUF846)
  2. XM_006522314.5XP_006522377.1  Golgi apparatus membrane protein TVP23 homolog A isoform X1

    Conserved Domains (1) summary
    pfam05832
    Location:39198
    DUF846; Eukaryotic protein of unknown function (DUF846)
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