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Kctd16 potassium channel tetramerisation domain containing 16 [ Mus musculus (house mouse) ]

Gene ID: 383348, updated on 23-Jun-2021

Summary

Official Symbol
Kctd16provided by MGI
Official Full Name
potassium channel tetramerisation domain containing 16provided by MGI
Primary source
MGI:MGI:1914659
See related
Ensembl:ENSMUSG00000051401
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm1267; 2900055J20Rik; 4930434H12Rik
Expression
Biased expression in testis adult (RPKM 6.6), cortex adult (RPKM 4.6) and 5 other tissues See more
Orthologs
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Genomic context

See Kctd16 in Genome Data Viewer
Location:
18; 18 B3
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (40389358..40680311)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (40256305..40547258)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (40418015..40690838)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 41708 Neighboring gene Yip1 domain family, member 5 Neighboring gene predicted gene, 31087 Neighboring gene ribosomal protein S19, pseudogene 13 Neighboring gene predicted gene, 31205 Neighboring gene predicted gene, 41710

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1)  1 citation
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in protein homooligomerization IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within regulation of G protein-coupled receptor signaling pathway IGI
Inferred from Genetic Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in cell junction IEA
Inferred from Electronic Annotation
more info
 
located_in cell projection IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in postsynaptic membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in postsynaptic membrane IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in presynaptic membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in presynaptic membrane IDA
Inferred from Direct Assay
more info
PubMed 
part_of receptor complex IDA
Inferred from Direct Assay
more info
PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
BTB/POZ domain-containing protein KCTD16

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001371039.1NP_001357968.1  BTB/POZ domain-containing protein KCTD16

    Status: VALIDATED

    Source sequence(s)
    AC098707, AC127249
    Consensus CDS
    CCDS50264.1
    Related
    ENSMUSP00000158201.2, ENSMUST00000236889.2
    Conserved Domains (1) summary
    cd18398
    Location:23125
    BTB_POZ_KCTD16; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium channel tetramerization domain-containing protein 16 (KCTD16)
  2. NM_001371040.1NP_001357969.1  BTB/POZ domain-containing protein KCTD16

    Status: VALIDATED

    Source sequence(s)
    AC098707, AC127249
    Consensus CDS
    CCDS50264.1
    Conserved Domains (1) summary
    cd18398
    Location:23125
    BTB_POZ_KCTD16; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium channel tetramerization domain-containing protein 16 (KCTD16)
  3. NM_001371041.1NP_001357970.1  BTB/POZ domain-containing protein KCTD16

    Status: VALIDATED

    Source sequence(s)
    AC098707, AC127249
    Consensus CDS
    CCDS50264.1
    Related
    ENSMUSP00000089547.5, ENSMUST00000091927.5
    Conserved Domains (1) summary
    cd18398
    Location:23125
    BTB_POZ_KCTD16; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium channel tetramerization domain-containing protein 16 (KCTD16)
  4. NM_026135.2NP_080411.1  BTB/POZ domain-containing protein KCTD16

    See identical proteins and their annotated locations for NP_080411.1

    Status: VALIDATED

    Source sequence(s)
    AC098707, AC127249
    Consensus CDS
    CCDS50264.1
    UniProtKB/Swiss-Prot
    Q5DTY9
    Conserved Domains (1) summary
    cd18398
    Location:23125
    BTB_POZ_KCTD16; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium channel tetramerization domain-containing protein 16 (KCTD16)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    40389358..40680311
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_045177.1: Suppressed sequence

    Description
    NR_045177.1: This RefSeq was removed because it is primarily UTR sequence.
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