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CG2162 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 38360, updated on 10-May-2024

Summary

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Official Symbol
CG2162provided by FlyBase
Primary source
FLYBASE:FBgn0035388
Locus tag
Dmel_CG2162
See related
AllianceGenome:FB:FBgn0035388
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
anon-EST:Posey170; Dmel\CG2162
Summary
Predicted to enable nucleic acid binding activity. Is expressed in several structures, including dorsal ectoderm anlage; embryonic/larval deutocerebrum; germ layer; local interneuron of adult antennal lobe; and presumptive embryonic/larval system. Orthologous to several human genes including R3HCC1L (R3H domain and coiled-coil containing 1 like). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See CG2162 in Genome Data Viewer
Location:
63A3-63A3; 3-5 cM
Exon count:
10
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (3035196..3040469)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (3035196..3040469)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene always early Neighboring gene Peroxiredoxin 4 Neighboring gene scramblase 2 Neighboring gene Sphingosine kinase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Neuronal Cbl controls biosynthesis of insulin-like peptides in Drosophila melanogaster. Yu Y, et al. Mol Cell Biol, 2012 Sep. PMID 22778134, Free PMC Article
  2. Diversity and wiring variability of olfactory local interneurons in the Drosophila antennal lobe. Chou YH, et al. Nat Neurosci, 2010 Apr. PMID 20139975, Free PMC Article
  3. Diversity, variability, and suboesophageal connectivity of antennal lobe neurons in D. melanogaster larvae. Thum AS, et al. J Comp Neurol, 2011 Dec 1. PMID 21800296
  4. Paucity of chimeric gene-transposable element transcripts in the Drosophila melanogaster genome. Lipatov M, et al. BMC Biol, 2005 Nov 12. PMID 16283942, Free PMC Article
  5. Time-resolved mapping of genetic interactions to model rewiring of signaling pathways. Heigwer F, et al. Elife, 2018 Dec 28. PMID 30592458, Free PMC Article

See all (30) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG2162-PA
CG2162-PE
CG2162-PF
NP_001163332.2
  • non-AUG (AUC) translation initiation

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    3035196..3040469
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_139503.3 → NP_647760.1  uncharacterized protein Dmel_CG2162, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_647760.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VZW2
    Related
    FBpp0072851
    Conserved Domains (1) summary
    cl17169
    Location:392 → 456
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. NM_001169861.2 → NP_001163332.2  uncharacterized protein Dmel_CG2162, isoform E [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001163332.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    E1JIB4
    Conserved Domains (2) summary
    cl00297
    Location:6 → 70
    R3H; R3H domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. R3H domains are found in proteins together with ATPase domains, SF1 helicase domains, SF2 DEAH helicase domains, Cys-rich ...
    cl17169
    Location:519 → 583
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. NM_001274420.2 → NP_001261349.2  uncharacterized protein Dmel_CG2162, isoform F [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001261349.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8MRH9
    Conserved Domains (1) summary
    cl17169
    Location:172 → 236
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
E1JIB4 E1JIB4
Q8MRH9 Q8MRH9
Q9VZW2 Q9VZW2

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