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CG1316 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 38526, updated on 4-Apr-2024

Summary

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Official Symbol
CG1316provided by FlyBase
Primary source
FLYBASE:FBgn0035526
Locus tag
Dmel_CG1316
See related
AllianceGenome:FB:FBgn0035526
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
cg1316; Dmel\CG1316
Summary
Predicted to enable mRNA binding activity. Is expressed in adult head and organism. Orthologous to human RBM45 (RNA binding motif protein 45). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
64A12-64A12; 3-10 cM
Exon count:
9
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (4283851..4286865)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (4283851..4286865)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene Choline transporter-like 1 Neighboring gene uncharacterized protein Neighboring gene shrew Neighboring gene Transcription factor IIEbeta Neighboring gene Hexosaminidase 1 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Conservation of gene order, structure and sequence between three closely linked genes in Drosophila melanogaster and Drosophila virilis. Lyamouri M, et al. Gene, 2002 Jan 9. PMID 11814692
  2. A novel method for quantifying the rate of embryogenesis uncovers considerable genetic variation for the duration of embryonic development in Drosophila melanogaster. Horváth B, et al. BMC Evol Biol, 2016 Oct 7. PMID 27717305, Free PMC Article
  3. A genetic screen in Drosophila for regulators of human prostate cancer progression. Ito S, et al. Biochem Biophys Res Commun, 2014 Sep 5. PMID 25117438
  4. Amyloidogenic Oligomerization Transforms Drosophila Orb2 from a Translation Repressor to an Activator. Khan MR, et al. Cell, 2015 Dec 3. PMID 26638074, Free PMC Article
  5. Zinc Finger RNA-Binding Protein Zn72D Regulates ADAR-Mediated RNA Editing in Neurons. Sapiro AL, et al. Cell Rep, 2020 May 19. PMID 32433963, Free PMC Article

See all (33) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG1316-PA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    4283851..4286865
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_139630.3 → NP_647887.1  uncharacterized protein Dmel_CG1316 [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_647887.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VZE4
    Related
    FBpp0073089
    Conserved Domains (4) summary
    cd12366
    Location:25 → 105
    RRM1_RBM45; RNA recognition motif 1 in RNA-binding protein 45 (RBM45) and similar proteins
    cd12367
    Location:122 → 195
    RRM2_RBM45; RNA recognition motif 2 in RNA-binding protein 45 (RBM45) and similar proteins
    cd12368
    Location:267 → 339
    RRM3_RBM45; RNA recognition motif 3 in RNA-binding protein 45 (RBM45) and similar proteins
    cd12369
    Location:383 → 449
    RRM4_RBM45; RNA recognition motif 4 in RNA-binding protein 45 (RBM45) and similar proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9VZE4 Q9VZE4

Gene LinkOut

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