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Defb50 defensin beta 50 [ Mus musculus (house mouse) ]

Gene ID: 387334, updated on 23-Jun-2021

Summary

Official Symbol
Defb50provided by MGI
Official Full Name
defensin beta 50provided by MGI
Primary source
MGI:MGI:3055870
See related
Ensembl:ENSMUSG00000058568
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Pbd; Pbd1; BD-50; Defb37; mBD-50; AY387658
Expression
Low expression observed in reference dataset See more
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Genomic context

See Defb50 in Genome Data Viewer
Location:
8; 8 A2
Exon count:
2
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (22313555..22321312)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (21823539..21831296)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (22934011..22941768)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene defensin beta 1 Neighboring gene predicted gene 15316 Neighboring gene defensin beta 2 Neighboring gene defensin beta 10

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
acts_upstream_of_or_within defense response IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within defense response to bacterium IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
beta-defensin 50
Names
defensin, beta 37
prostate beta defensin 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199067.1NP_951022.1  beta-defensin 50 precursor

    See identical proteins and their annotated locations for NP_951022.1

    Status: VALIDATED

    Source sequence(s)
    AY387658
    Consensus CDS
    CCDS40283.1
    UniProtKB/Swiss-Prot
    Q6TU36
    Related
    ENSMUSP00000077918.7, ENSMUST00000078879.7

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    22313555..22321312
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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