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CG7339 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 39310, updated on 26-Aug-2021

Summary

Official Symbol
CG7339provided by FlyBase
Primary source
FLYBASE:FBgn0036188
Locus tag
Dmel_CG7339
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Dmel\CG7339; lincRNA.S4825
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Genomic context

See CG7339 in Genome Data Viewer
Location:
68D1-68D1; 3-36 cM
Exon count:
3
Annotation release Status Assembly Chr Location
Release 6.32 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (11648756..11650499)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (11641856..11643599)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene RIO kinase 1 Neighboring gene uncharacterized protein Neighboring gene mir-274 stem loop Neighboring gene long non-coding RNA:CR45881

Genomic regions, transcripts, and products

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

  • Homologs of the CG7339 gene: The CG7339 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, mouse, rat, chicken, zebrafish, mosquito, C.elegans, S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, A.thaliana, rice, and frog.
  • Orthologs

Gene Ontology Provided by FlyBase

Process Evidence Code Pubs
involved_in transcription initiation from RNA polymerase III promoter IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
part_of RNA polymerase III complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
uncharacterized protein
Names
CG7339-PA
CG7339-PB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    11648756..11650499
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001274791.1NP_001261720.1  uncharacterized protein Dmel_CG7339, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001261720.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VTL6
    Related
    FBpp0303920, FBtr0331530
    Conserved Domains (3) summary
    COG1095
    Location:1212
    RPB7; DNA-directed RNA polymerase, subunit E'/Rpb7 [Transcription]
    cd04330
    Location:281
    RNAP_III_Rpc25_N; RNAP_III_Rpc25_N: Rpc25, N-terminal ribonucleoprotein (RNP) domain. Rpc25 is a subunit of eukaryotic RNA polymerase (RNAP) III and is homologous to Rpa43 of eukaryotic RNAP I, Rpb7 of eukaryotic RNAP II, and RpoE of archaeal RNAP. Rpc25 has two domains, ...
    pfam08292
    Location:79212
    RNA_pol_Rbc25; RNA polymerase III subunit Rpc25
  2. NM_140233.2NP_648490.1  uncharacterized protein Dmel_CG7339, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_648490.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VTL6
    Related
    FBpp0075838, FBtr0076107
    Conserved Domains (3) summary
    COG1095
    Location:1212
    RPB7; DNA-directed RNA polymerase, subunit E'/Rpb7 [Transcription]
    cd04330
    Location:281
    RNAP_III_Rpc25_N; RNAP_III_Rpc25_N: Rpc25, N-terminal ribonucleoprotein (RNP) domain. Rpc25 is a subunit of eukaryotic RNA polymerase (RNAP) III and is homologous to Rpa43 of eukaryotic RNAP I, Rpb7 of eukaryotic RNAP II, and RpoE of archaeal RNAP. Rpc25 has two domains, ...
    pfam08292
    Location:79212
    RNA_pol_Rbc25; RNA polymerase III subunit Rpc25
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