Format

Send to:

Choose Destination

inip ints3 and nabp interacting protein [ Danio rerio (zebrafish) ]

Gene ID: 393188, updated on 6-May-2021

Summary

Official Symbol
inipprovided by ZNC
Official Full Name
ints3 and nabp interacting proteinprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-961
See related
Ensembl:ENSDARG00000028523
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
SOSS-C; ssbip1; zgc:56259; zgc:86662
Annotation information
Annotation category: partial on reference assembly
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See inip in Genome Data Viewer
Location:
chromosome: 10
Exon count:
4
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (11319971..11323134, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (11361733..11364896, complement)
103 previous assembly Zv9 (GCF_000002035.4) 10 NC_007121.5 (11285867..11289030, complement)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene hydroxysteroid dehydrogenase like 2 Neighboring gene KIAA1958 ortholog Neighboring gene lin-54 DREAM MuvB core complex component Neighboring gene COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Homology

Clone Names

  • MGC56259, MGC86662

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in DNA repair IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within DNA repair IEA
Inferred from Electronic Annotation
more info
 
involved_in DNA repair ISS
Inferred from Sequence or Structural Similarity
more info
 
acts_upstream_of_or_within cellular response to DNA damage stimulus IEA
Inferred from Electronic Annotation
more info
 
involved_in response to ionizing radiation ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
part_of SOSS complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of SOSS complex IEA
Inferred from Electronic Annotation
more info
 
part_of SOSS complex ISS
Inferred from Sequence or Structural Similarity
more info
 
is_active_in nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
SOSS complex subunit C
Names
INTS3- and NABP-interacting protein
SSB-interacting protein 1
sensor of single-strand DNA complex subunit C
sensor of ssDNA subunit C
single-stranded DNA-binding protein-interacting protein 1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200219.1NP_956513.1  SOSS complex subunit C

    See identical proteins and their annotated locations for NP_956513.1

    Status: PROVISIONAL

    Source sequence(s)
    BC046030
    UniProtKB/Swiss-Prot
    Q7ZV26
    Related
    ENSDARP00000038879.3, ENSDART00000039145.4
    Conserved Domains (1) summary
    pfam15925
    Location:1899
    SOSSC; SOSS complex subunit C

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    11319971..11323134 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center