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arl3l1 ADP ribosylation factor like GTPase 3, like 1 [ Danio rerio (zebrafish) ]

Gene ID: 393666, updated on 25-Jan-2022

Summary

Official Symbol
arl3l1provided by ZNC
Official Full Name
ADP ribosylation factor like GTPase 3, like 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1649
See related
Ensembl:ENSDARG00000111106 AllianceGenome:ZFIN:ZDB-GENE-040426-1649
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:73049
Summary
Predicted to enable GTP binding activity. Acts upstream of or within regulation of axon extension involved in axon guidance. Predicted to be active in cytoplasm and microtubule cytoskeleton. Is expressed in neural plate; optic vesicle; periderm; and visual system. [provided by Alliance of Genome Resources, Nov 2021]
Orthologs
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Genomic context

See arl3l1 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (33172400..33185577)
105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (33139052..33152410)
103 previous assembly Zv9 (GCF_000002035.4) 21 NC_007132.5 (31939672..31952851)

Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene zgc:194629 Neighboring gene regulator of G protein signaling 14b Neighboring gene myozenin-2 Neighboring gene RNA binding motif protein 22

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Homology

Clone Names

  • MGC73049

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables GTP binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in cilium assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within regulation of axon extension involved in axon guidance IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in microtubule cytoskeleton IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
ADP ribosylation factor like GTPase 3, like 1
Names
ADP-ribosylation factor-like 3, like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200693.1NP_956987.1  ADP ribosylation factor like GTPase 3, like 1

    See identical proteins and their annotated locations for NP_956987.1

    Status: PROVISIONAL

    Source sequence(s)
    BC059431
    UniProtKB/TrEMBL
    Q6PC92
    Related
    ENSDARP00000149094.1, ENSDART00000183532.1
    Conserved Domains (2) summary
    smart00178
    Location:17182
    SAR; Sar1p-like members of the Ras-family of small GTPases
    cd04155
    Location:8181
    Arl3; Arf-like 3 (Arl3) GTPase

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007132.7 Reference GRCz11 Primary Assembly

    Range
    33172400..33185577
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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