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arl3l2 ADP ribosylation factor like GTPase 3, like 2 [ Danio rerio (zebrafish) ]

Gene ID: 393692, updated on 5-Jan-2022

Summary

Official Symbol
arl3l2provided by ZNC
Official Full Name
ADP ribosylation factor like GTPase 3, like 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1678
See related
Ensembl:ENSDARG00000015404
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:73116
Summary
Predicted to enable GTP binding activity. Acts upstream of or within optomotor response and regulation of axon extension involved in axon guidance. Predicted to be active in cytoplasm and microtubule cytoskeleton. Is expressed in brain; head; and visual system. [provided by Alliance of Genome Resources, Nov 2021]
Orthologs
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Genomic context

See arl3l2 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (909707..917073)
105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (891444..898809)
103 previous assembly Zv9 (GCF_000002035.4) 14 NC_007125.5 (908118..915459)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene regulator of G protein signaling 14a Neighboring gene uncharacterized LOC103912050 Neighboring gene myozenin 3a Neighboring gene acyl-CoA synthetase long chain family member 1b

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Homology

Clone Names

  • MGC73116

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables GTP binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in microtubule cytoskeleton IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
ADP ribosylation factor like GTPase 3, like 2; ADP-ribosylation factor-like 3, like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200719.1NP_957013.1  ADP ribosylation factor like GTPase 3, like 2

    See identical proteins and their annotated locations for NP_957013.1

    Status: PROVISIONAL

    Source sequence(s)
    BC059480
    UniProtKB/TrEMBL
    Q6PC43
    Related
    ENSDARP00000008099.5, ENSDART00000021346.8
    Conserved Domains (1) summary
    cd04155
    Location:8181
    Arl3; Arf-like 3 (Arl3) GTPase

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    909707..917073
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005169564.4XP_005169621.1  ADP-ribosylation factor-like 3, like 2 isoform X1

    UniProtKB/TrEMBL
    A0A140LG87
    Related
    ENSDARP00000142265.1, ENSDART00000172777.2
    Conserved Domains (1) summary
    cd04155
    Location:8180
    Arl3; Arf-like 3 (Arl3) GTPase
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