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CG11560 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 39376, updated on 10-May-2024

Summary

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Official Symbol
CG11560provided by FlyBase
Primary source
FLYBASE:FBgn0036249
Locus tag
Dmel_CG11560
See related
AllianceGenome:FB:FBgn0036249
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Dmel\CG11560
Summary
Predicted to enable DNA binding activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be active in nuclear body. Is expressed in central brain primordium; embryonic brain; larval ventral nerve cord; organism; and ventral nerve cord primordium. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

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See CG11560 in Genome Data Viewer
Location:
68F4-68F4; 3-38 cM
Exon count:
2
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (12120019..12121185)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (12113119..12114285)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene versatile Neighboring gene sunspot Neighboring gene ypsilon schachtel Neighboring gene Ionotropic receptor 68b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The BED finger, a novel DNA-binding domain in chromatin-boundary-element-binding proteins and transposases. Aravind L. Trends Biochem Sci, 2000 Sep. PMID 10973053
  2. Muscleblind, BSF and TBPH are mislocalized in the muscle sarcomere of a Drosophila myotonic dystrophy model. Llamusi B, et al. Dis Model Mech, 2013 Jan. PMID 23118342, Free PMC Article
  3. Genomics of Recombination Rate Variation in Temperature-Evolved Drosophila melanogaster Populations. Winbush A, et al. Genome Biol Evol, 2021 Jan 7. PMID 33247719, Free PMC Article
  4. mRNA-Associated Processes and Their Influence on Exon-Intron Structure in Drosophila melanogaster. Lepennetier G, et al. G3 (Bethesda), 2016 Jun 1. PMID 27172210, Free PMC Article
  5. Phylostratigraphic bias creates spurious patterns of genome evolution. Moyers BA, et al. Mol Biol Evol, 2015 Jan. PMID 25312911, Free PMC Article

See all (24) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nuclear body IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG11560-PA
CG11560-PB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    12120019..12121185
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001316463.1 → NP_001303392.1  uncharacterized protein Dmel_CG11560, isoform B [Drosophila melanogaster]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0S0WNE9, B6IDV8
    Conserved Domains (1) summary
    smart00614
    Location:48 → 93
    ZnF_BED; BED zinc finger

  2. NM_140290.3 → NP_648547.3  uncharacterized protein Dmel_CG11560, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_648547.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    B6IDV8, Q9VTT4
    Related
    FBpp0075725
    Conserved Domains (1) summary
    smart00614
    Location:48 → 93
    ZnF_BED; BED zinc finger
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A0S0WNE9 A0A0S0WNE9
Q8T004 Q8T004
Q9VTT4 Q9VTT4

Gene LinkOut

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