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ubqln1 ubiquilin 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 394829, updated on 5-Mar-2024

Summary

Official Symbol
ubqln1provided by Xenbase
Official Full Name
ubiquilin 1provided by Xenbase
Primary source
Xenbase:XB-GENE-986025
See related
Ensembl:ENSXETG00000016764
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
da41; dsk2; ubqn; xdrp1; plic-1; ubqln2
Orthologs
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Genomic context

Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (134064835..134076623)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (121848862..121859785)

Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein S18C Neighboring gene G kinase anchoring protein 1 Neighboring gene uncharacterized LOC105948530 Neighboring gene idnK, gluconokinase homolog (E. coli) Neighboring gene FERM domain containing 3

Genomic regions, transcripts, and products

General protein information

Preferred Names
ubiquilin-1
Names
ubiquilin 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_203890.1NP_989221.1  ubiquilin-1

    See identical proteins and their annotated locations for NP_989221.1

    Status: PROVISIONAL

    Source sequence(s)
    BC063190
    UniProtKB/TrEMBL
    F6RXL5, Q6P4Z3
    Related
    ENSXETP00000036574.4, ENSXETT00000036574.5
    Conserved Domains (4) summary
    smart00727
    Location:364396
    STI1; Heat shock chaperonin-binding motif
    cd14399
    Location:521560
    UBA_PLICs; UBA domain of eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins
    cd01808
    Location:1789
    Ubl_PLICs; ubiquitin-like (Ubl) domain found in eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins
    cl17974
    Location:194238
    STI1; STI1 domain

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    134064835..134076623
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031897220.1XP_031753080.1  ubiquilin-1 isoform X1

    UniProtKB/TrEMBL
    A0A8J1J7T3
    Conserved Domains (4) summary
    smart00727
    Location:364396
    STI1; Heat shock chaperonin-binding motif
    cd14399
    Location:519558
    UBA_PLICs; UBA domain of eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins
    cd01808
    Location:1789
    Ubl_PLICs; ubiquitin-like (Ubl) domain found in eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins
    cl17974
    Location:195238
    STI1; STI1 domain