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rps6kb1 ribosomal protein S6 kinase B1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 394938, updated on 5-Mar-2024

Summary

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Official Symbol
rps6kb1provided by Xenbase
Official Full Name
ribosomal protein S6 kinase B1provided by Xenbase
Primary source
Xenbase:XB-GENE-482409
See related
Ensembl:ENSXETG00000010731
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
s6k; ps6k; s6K1; p70s6k; stk14a; p70-s6k; rps6ka1; p70-alpha; rps6kb1-A
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
16
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (91518901..91548260)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (87405658..87435205)

Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene vacuole membrane protein 1 Neighboring gene uncharacterized LOC116408854 Neighboring gene tubulin delta 1 Neighboring gene uncharacterized LOC100490302 Neighboring gene ring finger protein, transmembrane 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within phosphorylation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within signal transduction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrial outer membrane IEA
Inferred from Electronic Annotation
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ribosomal protein S6 kinase beta-1
Names
p70(s6k)-alpha
ribosomal protein S6 kinase, 70kDa, polypeptide 1
NP_001034817.1
XP_012812128.1
XP_017946638.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001039728.1 → NP_001034817.1  ribosomal protein S6 kinase beta-1

    See identical proteins and their annotated locations for NP_001034817.1

    Status: PROVISIONAL

    Source sequence(s)
    CR848655
    UniProtKB/TrEMBL
    A0A803KKX8, Q28DP9
    Related
    ENSXETP00000023476.5, ENSXETT00000023476.5
    Conserved Domains (1) summary
    cd05584
    Location:90 → 412
    STKc_p70S6K; Catalytic domain of the Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    91518901..91548260
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018091149.2 → XP_017946638.1  ribosomal protein S6 kinase beta-1 isoform X2

    UniProtKB/TrEMBL
    A0A6I8R2L8, A0A8J0SY92
    Related
    ENSXETP00000076221.2, ENSXETT00000079906.2

  2. XM_012956674.3 → XP_012812128.1  ribosomal protein S6 kinase beta-1 isoform X1

    UniProtKB/TrEMBL
    A0A803KKX8, A0A8J0SF34
    Conserved Domains (1) summary
    cd05584
    Location:99 → 421
    STKc_p70S6K; Catalytic domain of the Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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