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F13A1 coagulation factor XIII A chain [ Gallus gallus (chicken) ]

Gene ID: 395420, updated on 3-Apr-2024

Summary

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Symbol
F13A1provided by CGNC
Full Name
coagulation factor XIII A chainprovided by CGNC
Primary source
CGNC:49310
See related
Ensembl:ENSGALG00010010923
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
29
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (64661857..64817572)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (64610784..64768104)

Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121109963 Neighboring gene lymphocyte antigen 86 Neighboring gene neuritin 1 Neighboring gene phenylalanyl-tRNA synthetase 2, mitochondrial Neighboring gene transfer RNA proline (anticodon CGG)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Chicken coagulation factor XIIIA is produced by the theca externa and stabilizes the ovarian follicular wall. Recheis B, et al. J Biol Chem, 2000 Nov 10. PMID 10948196

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-glutamine gamma-glutamyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in blood coagulation, fibrin clot formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptide cross-linking IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
coagulation factor XIII A chain
Names
coagulation factor XIII, A1 polypeptide
coagulation factor XIIIA
NP_990016.2
XP_046766265.1
XP_046766266.1
XP_046766267.1
XP_046773982.1
XP_046773990.1
XP_046774001.1
XP_046774010.1
XP_046774015.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_204685.2 → NP_990016.2  coagulation factor XIII A chain

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000040
    UniProtKB/TrEMBL
    A0A3Q3AZ85, Q9DER6
    Related
    ENSGALP00010014772.1, ENSGALT00010026148.1
    Conserved Domains (1) summary
    smart00460
    Location:315 → 407
    TGc; Transglutaminase/protease-like homologues

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    64661857..64817572
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046918034.1 → XP_046773990.1  coagulation factor XIII A chain isoform X2

    UniProtKB/TrEMBL
    A0A3Q3AZ85

  2. XM_046918045.1 → XP_046774001.1  coagulation factor XIII A chain isoform X2

    UniProtKB/TrEMBL
    A0A3Q3AZ85

  3. XM_046918054.1 → XP_046774010.1  coagulation factor XIII A chain isoform X2

    UniProtKB/TrEMBL
    A0A3Q3AZ85

  4. XM_046918059.1 → XP_046774015.1  coagulation factor XIII A chain isoform X2

    UniProtKB/TrEMBL
    A0A3Q3AZ85

  5. XM_046918026.1 → XP_046773982.1  coagulation factor XIII A chain isoform X1

    UniProtKB/TrEMBL
    E1BWG1, F1NTJ0
    Related
    ENSGALP00010014767.1, ENSGALT00010026143.1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    64610784..64768104
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046910310.1 → XP_046766266.1  coagulation factor XIII A chain isoform X2

  2. XM_046910311.1 → XP_046766267.1  coagulation factor XIII A chain isoform X2

  3. XM_046910309.1 → XP_046766265.1  coagulation factor XIII A chain isoform X1

Nucleotide Protein Strain
Heading Accession and Version

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