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LYZ lysozyme (renal amyloidosis) [ Gallus gallus (chicken) ]

Gene ID: 396218, updated on 28-Jun-2021

Summary

Official Symbol
LYZprovided by CGNC
Official Full Name
lysozyme (renal amyloidosis)provided by CGNC
Primary source
CGNC:7570
See related
Ensembl:ENSGALG00000009963
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
LYZC; dystrophin
Orthologs
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Genomic context

See LYZ in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
105 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (35550013..35553725)
105 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.1) 1 NC_052573.1 (35896195..35899882)
104 previous assembly GRCg6a (GCF_000002315.5) 1 NC_006088.5 (35542896..35546583)
103 previous assembly Gallus_gallus-5.0 (GCF_000002315.4) 1 NC_006088.4 (35425914..35429601)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121109492 Neighboring gene cleavage and polyadenylation specific factor 6 Neighboring gene uncharacterized LOC107052751 Neighboring gene uncharacterized LOC121109493 Neighboring gene YEATS domain containing 4 Neighboring gene fibroblast growth factor receptor substrate 2

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables beta-N-acetylglucosaminidase activity IDA
Inferred from Direct Assay
more info
PubMed 
enables identical protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables lysozyme activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables lysozyme activity IDA
Inferred from Direct Assay
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in cell wall macromolecule catabolic process IDA
Inferred from Direct Assay
more info
PubMed 
involved_in cytolysis IEA
Inferred from Electronic Annotation
more info
 
involved_in defense response to Gram-negative bacterium IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in defense response to Gram-positive bacterium IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in defense response to bacterium TAS
Traceable Author Statement
more info
PubMed 
involved_in killing of cells of other organism IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in endoplasmic reticulum IDA
Inferred from Direct Assay
more info
PubMed 
located_in extracellular space IDA
Inferred from Direct Assay
more info
PubMed 
located_in extracellular space NAS
Non-traceable Author Statement
more info
PubMed 
located_in extracellular space TAS
Traceable Author Statement
more info
PubMed 

General protein information

Preferred Names
lysozyme C
Names
1,4-beta-N-acetylmuramidase C
4-beta-N-acetylmuramidase C
allergen Gal d IV
egg white lysozyme
NP_990612.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_205281.1NP_990612.1  lysozyme C precursor

    See identical proteins and their annotated locations for NP_990612.1

    Status: PROVISIONAL

    Source sequence(s)
    V00428
    UniProtKB/Swiss-Prot
    P00698
    Related
    ENSGALP00000016177.1, ENSGALT00000016196.3
    Conserved Domains (1) summary
    smart00263
    Location:19146
    LYZ1; Alpha-lactalbumin / lysozyme C

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    35550013..35553725
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    35896195..35899882
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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