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DMD dystrophin [ Gallus gallus (chicken) ]

Gene ID: 396236, updated on 22-Sep-2022

Summary

Symbol
DMDprovided by CGNC
Full Name
dystrophinprovided by CGNC
Primary source
CGNC:49712
See related
Ensembl:ENSGALG00010001982
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
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Genomic context

See DMD in Genome Data Viewer
Location:
chromosome: 1
Exon count:
87
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (114493698..115657311)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (114574208..115737679)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene maestro heat-like repeat-containing protein family member 2B Neighboring gene maestro heat-like repeat-containing protein family member 2B Neighboring gene uncharacterized LOC107057229 Neighboring gene maestro heat-like repeat-containing protein family member 2B Neighboring gene maestro heat-like repeat-containing protein family member 2B

Genomic regions, transcripts, and products

General gene information

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables actin filament binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in actin filament bundle assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in actin filament network formation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in actin filament IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in actin filament bundle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in plasma membrane bounded cell projection IEA
Inferred from Electronic Annotation
more info
 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
dystrophin
Names
putative short dystrophin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_205299.3NP_990630.3  dystrophin

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000021
    Related
    ENSGALP00010002798.1, ENSGALT00010004609.1
    Conserved Domains (6) summary
    COG1196
    Location:10671850
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG5069
    Location:16236
    SAC6; Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
    cd00176
    Location:342560
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    cd00201
    Location:30563085
    WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...
    cd02334
    Location:33083356
    ZZ_dystrophin; Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane ...
    cd16246
    Location:31223283
    EFh_DMD; EF-hand-like motif found in dystrophin

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    114493698..115657311
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046919009.1XP_046774965.1  dystrophin isoform X2

  2. XM_046919243.1XP_046775199.1  dystrophin isoform X10

    Related
    ENSGALP00010002817.1, ENSGALT00010004653.1
  3. XM_046919036.1XP_046774992.1  dystrophin isoform X3

  4. XM_046919415.1XP_046775371.1  dystrophin isoform X15

  5. XM_046919117.1XP_046775073.1  dystrophin isoform X7

  6. XM_046919509.1XP_046775465.1  dystrophin isoform X19

  7. XM_046919461.1XP_046775417.1  dystrophin isoform X17

    Related
    ENSGALP00010002762.1, ENSGALT00010004541.1
  8. XM_046918964.1XP_046774920.1  dystrophin isoform X1

  9. XM_046918986.1XP_046774942.1  dystrophin isoform X1

  10. XM_046919145.1XP_046775101.1  dystrophin isoform X8

  11. XM_046919178.1XP_046775134.1  dystrophin isoform X8

  12. XM_046919101.1XP_046775057.1  dystrophin isoform X6

  13. XM_046919295.1XP_046775251.1  dystrophin isoform X12

  14. XM_046919217.1XP_046775173.1  dystrophin isoform X9

    Related
    ENSGALP00010002757.1, ENSGALT00010004531.1
  15. XM_046919445.1XP_046775401.1  dystrophin isoform X16

  16. XM_046919069.1XP_046775025.1  dystrophin isoform X4

  17. XM_046919367.1XP_046775323.1  dystrophin isoform X13

  18. XM_046919399.1XP_046775355.1  dystrophin isoform X14

  19. XM_046919539.1XP_046775495.1  dystrophin isoform X21

  20. XM_046919482.1XP_046775438.1  dystrophin isoform X18

  21. XM_046919085.1XP_046775041.1  dystrophin isoform X5

    Related
    ENSGALP00010002772.1, ENSGALT00010004560.1
  22. XM_046919519.1XP_046775475.1  dystrophin isoform X20

  23. XM_046919257.1XP_046775213.1  dystrophin isoform X11

  24. XM_046919570.1XP_046775526.1  dystrophin isoform X22

  25. XM_046919597.1XP_046775553.1  dystrophin isoform X23

  26. XM_046919616.1XP_046775572.1  dystrophin isoform X24

  27. XM_046919640.1XP_046775596.1  dystrophin isoform X25

  28. XM_046919655.1XP_046775611.1  dystrophin isoform X26

  29. XM_046919779.1XP_046775735.1  dystrophin isoform X30

  30. XM_046919670.1XP_046775626.1  dystrophin isoform X27

  31. XM_046919690.1XP_046775646.1  dystrophin isoform X28

  32. XM_046919701.1XP_046775657.1  dystrophin isoform X29

  33. XM_046919847.1XP_046775803.1  dystrophin isoform X31

RNA

  1. XR_006934806.1 RNA Sequence

  2. XR_006934864.1 RNA Sequence

  3. XR_006934881.1 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    114574208..115737679
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046906877.1XP_046762833.1  dystrophin isoform X2

  2. XM_046906876.1XP_046762832.1  dystrophin isoform X1

  3. XM_046906881.1XP_046762837.1  dystrophin isoform X18

  4. XM_046906879.1XP_046762835.1  dystrophin isoform X5

  5. XM_046906882.1XP_046762838.1  dystrophin isoform X20

  6. XM_046906878.1XP_046762834.1  dystrophin isoform X32

  7. XM_046906880.1XP_046762836.1  dystrophin isoform X11

  8. XM_046906883.1XP_046762839.1  dystrophin isoform X22

  9. XM_046906884.1XP_046762840.1  dystrophin isoform X23

  10. XM_046906885.1XP_046762841.1  dystrophin isoform X24

  11. XM_046906886.1XP_046762842.1  dystrophin isoform X25

  12. XM_046906887.1XP_046762843.1  dystrophin isoform X26

  13. XM_046906891.1XP_046762847.1  dystrophin isoform X30

  14. XM_046906888.1XP_046762844.1  dystrophin isoform X27

  15. XM_046906889.1XP_046762845.1  dystrophin isoform X28

  16. XM_046906890.1XP_046762846.1  dystrophin isoform X29

  17. XM_046906892.1XP_046762848.1  dystrophin isoform X31