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FTCD formimidoyltransferase cyclodeaminase [ Sus scrofa (pig) ]

Gene ID: 397517, updated on 2-Oct-2018

Summary

Gene symbol
FTCD
Gene description
formimidoyltransferase cyclodeaminase
See related
Ensembl:ENSSSCG00000027926
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus
Expression
Biased expression in liver (RPKM 156.8), kidney (RPKM 87.5) and 1 other tissue See more
Orthologs

Genomic context

See FTCD in Genome Data Viewer
Location:
chromosome: 13
Exon count:
14
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) Unplaced Scaffold NW_018085356.1 (580183..594555)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (218617763..218632226, complement)

NW_018085356.1Genomic Context describing neighboring genes Neighboring gene lanosterol synthase Neighboring gene spermatogenesis and centriole associated 1 like Neighboring gene collagen type VI alpha 2 chain Neighboring gene uncharacterized LOC110259167

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Homology

Gene Ontology Provided by GO

Function Evidence Code Pubs
folic acid binding IEA
Inferred from Electronic Annotation
more info
 
formimidoyltetrahydrofolate cyclodeaminase activity IDA
Inferred from Direct Assay
more info
PubMed 
glutamate formimidoyltransferase activity IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
histidine catabolic process IC
Inferred by Curator
more info
PubMed 
histidine catabolic process to glutamate and formamide IEA
Inferred from Electronic Annotation
more info
 
histidine catabolic process to glutamate and formate IEA
Inferred from Electronic Annotation
more info
 
tetrahydrofolate interconversion IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
centriole IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
formimidoyltransferase-cyclodeaminase
Names
formiminotransferase cyclodeaminase
NP_999440.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_214275.1NP_999440.1  formimidoyltransferase-cyclodeaminase

    See identical proteins and their annotated locations for NP_999440.1

    Status: PROVISIONAL

    Source sequence(s)
    L16507
    UniProtKB/Swiss-Prot
    P53603
    Related
    ENSSSCP00000022108.2, ENSSSCT00000026888.2
    Conserved Domains (4) summary
    TIGR02024
    Location:1328
    FtcD; glutamate formiminotransferase
    pfam02971
    Location:181324
    FTCD; Formiminotransferase domain
    pfam04961
    Location:339519
    FTCD_C; Formiminotransferase-cyclodeaminase
    pfam07837
    Location:7179
    FTCD_N; Formiminotransferase domain, N-terminal subdomain

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NW_018085356.1 Reference Sscrofa11.1 Primary Assembly

    Range
    580183..594555
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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