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CAPNS1 calpain small subunit 1 [ Sus scrofa (pig) ]

Gene ID: 397587, updated on 11-Jun-2019

Summary

Gene symbol
CAPNS1
Gene description
calpain small subunit 1
See related
Ensembl:ENSSSCG00000030149
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus
Annotation information
Annotation category: partial on reference assembly
Expression
Ubiquitous expression in lung (RPKM 194.5), subcutaneous adipose (RPKM 164.5) and 8 other tissues See more
Orthologs

Genomic context

See CAPNS1 in Genome Data Viewer
Location:
6; 6
Exon count:
11
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (45511410..45518610)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (40913605..40920805)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene ovo like zinc finger 3 Neighboring gene RNA polymerase II subunit I Neighboring gene tubulin folding cofactor B Neighboring gene cytochrome c oxidase polypeptide VIIa-muscle/heart Neighboring gene zinc finger protein 146 Neighboring gene zinc finger protein 565

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by GO

Function Evidence Code Pubs
calcium ion binding IEA
Inferred from Electronic Annotation
more info
 
calcium-dependent cysteine-type endopeptidase activity IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
proteolysis IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
cytosol IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
calpain small subunit 1
Names
CANP small subunit
CDPS
CSS1
calcium-activated neutral proteinase small subunit
calcium-dependent protease small subunit 1
calpain I light subunit
calpain regulatory subunit
NP_999483.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_214318.2NP_999483.1  calpain small subunit 1

    See identical proteins and their annotated locations for NP_999483.1

    Status: PROVISIONAL

    Source sequence(s)
    M11779
    UniProtKB/Swiss-Prot
    P04574
    Related
    ENSSSCP00000025968.1, ENSSSCT00000031590.2
    Conserved Domains (1) summary
    cl08302
    Location:142192
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    45511410..45518610
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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