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CG9705 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 39875, updated on 10-May-2024

Summary

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Official Symbol
CG9705provided by FlyBase
Primary source
FLYBASE:FBgn0036661
Locus tag
Dmel_CG9705
See related
AllianceGenome:FB:FBgn0036661
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Dmel\CG9705
Summary
Predicted to enable mRNA 3'-UTR binding activity. Involved in dendrite morphogenesis. Predicted to be active in cytoplasm. Is expressed in several structures, including embryonic brain; embryonic/larval midgut; extended germ band embryo; germline cell; and gonad. Orthologous to human CARHSP1 (calcium regulated heat stable protein 1) and CSDC2 (cold shock domain containing C2). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See CG9705 in Genome Data Viewer
Location:
73C4-73C4; 3-44 cM
Exon count:
4
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (16780100..16782419)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (16773200..16775519)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR46214 Neighboring gene Neurotactin Neighboring gene mutagen-sensitive 302 Neighboring gene uncharacterized protein Neighboring gene eukaryotic translation initiation factor 3 subunit e Neighboring gene uncharacterized protein Neighboring gene nudC

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. In vivo functional characterization of the SARS-Coronavirus 3a protein in Drosophila. Wong SL, et al. Biochem Biophys Res Commun, 2005 Nov 18. PMID 16212942, Free PMC Article
  2. Neurofibromin 1 in mushroom body neurons mediates circadian wake drive through activating cAMP-PKA signaling. Machado Almeida P, et al. Nat Commun, 2021 Oct 1. PMID 34599173, Free PMC Article
  3. Functional genomic analyses of two morphologically distinct classes of Drosophila sensory neurons: post-mitotic roles of transcription factors in dendritic patterning. Iyer EP, et al. PLoS One, 2013. PMID 23977298, Free PMC Article
  4. Transcriptional basis of the acclimation to high environmental temperature at the olfactory receptor organs of Drosophila melanogaster. Riveron J, et al. BMC Genomics, 2013 Apr 17. PMID 23590196, Free PMC Article
  5. A single-cell atlas reveals unanticipated cell type complexity in Drosophila ovaries. Slaidina M, et al. Genome Res, 2021 Oct. PMID 34389661, Free PMC Article

See all (41) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables mRNA 3'-UTR binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in dendrite morphogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of mRNA stability IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG9705-PA
CG9705-PB
CG9705-PC

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    16780100..16782419
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_140663.4 → NP_648920.1  uncharacterized protein Dmel_CG9705, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_648920.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9VVA0
    UniProtKB/TrEMBL
    M9PFS8
    Related
    FBpp0075084
    Conserved Domains (1) summary
    cd04458
    Location:55 → 120
    CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...

  2. NM_168683.2 → NP_730197.1  uncharacterized protein Dmel_CG9705, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_730197.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9VVA0
    UniProtKB/TrEMBL
    M9PFS8
    Related
    FBpp0075083
    Conserved Domains (1) summary
    cd04458
    Location:55 → 120
    CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...

  3. NM_001275043.1 → NP_001261972.1  uncharacterized protein Dmel_CG9705, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001261972.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9VVA0
    UniProtKB/TrEMBL
    M9PFS8
    Conserved Domains (1) summary
    cd04458
    Location:55 → 120
    CSP_CDS; Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
M9PFS8 M9PFS8
Q9VVA0.1 Q9VVA0

Gene LinkOut

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