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LINC00547 long intergenic non-protein coding RNA 547 [ Homo sapiens (human) ]

Gene ID: 400121, updated on 10-Oct-2023

Summary

Official Symbol
LINC00547provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 547provided by HGNC
Primary source
HGNC:HGNC:43682
See related
Ensembl:ENSG00000275226 AllianceGenome:HGNC:43682
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

See LINC00547 in Genome Data Viewer
Location:
13q13.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (37534940..37551536)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (36754318..36770914)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (38109077..38125673)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377814 Neighboring gene NANOG hESC enhancer GRCh37_chr13:37846978-37847479 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:37853957-37854516 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr13:37854517-37855076 Neighboring gene uncharacterized LOC124903159 Neighboring gene Sharpr-MPRA regulatory region 1712 Neighboring gene long intergenic non-protein coding RNA 1048 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:38120407-38120907 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:38169125-38169774 Neighboring gene periostin Neighboring gene transient receptor potential cation channel subfamily C member 4 Neighboring gene Sharpr-MPRA regulatory region 14178 Neighboring gene Sharpr-MPRA regulatory region 929 Neighboring gene RNA, 5S ribosomal pseudogene 26

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040244.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK092066, AL646087
    Related
    ENST00000612438.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    37534940..37551536
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    36754318..36770914
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)