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FAM87B family with sequence similarity 87 member B [ Homo sapiens (human) ]

Gene ID: 400728, updated on 10-Oct-2023

Summary

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Official Symbol
FAM87Bprovided by HGNC
Official Full Name
family with sequence similarity 87 member Bprovided by HGNC
Primary source
HGNC:HGNC:32236
See related
Ensembl:ENSG00000177757 AllianceGenome:HGNC:32236
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See FAM87B in Genome Data Viewer
Location:
1p36.33
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (817371..819834)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (246378..248841)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (752751..755214)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100288069 Neighboring gene RNA, U6 small nuclear 1199, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1 Neighboring gene long intergenic non-protein coding RNA 1409 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:725666-726630 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:726662-727228 Neighboring gene uncharacterized LOC124903817 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1 Neighboring gene long intergenic non-protein coding RNA 115 Neighboring gene long intergenic non-protein coding RNA 1128 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:772694-772873

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Clone Names

  • FLJ40008

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_103536.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL669831
    Related
    ENST00000326734.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    817371..819834
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    246378..248841
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_207464.1: Suppressed sequence

    Description
    NM_207464.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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