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hnrnph1 heterogeneous nuclear ribonucleoprotein H1 [ Danio rerio (zebrafish) ]

Gene ID: 402984, updated on 27-Mar-2024

Summary

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Official Symbol
hnrnph1provided by ZNC
Official Full Name
heterogeneous nuclear ribonucleoprotein H1provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1856
See related
Ensembl:ENSDARG00000040881 AllianceGenome:ZFIN:ZDB-GENE-040426-1856
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:77712
Summary
Predicted to enable RNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to be part of ribonucleoprotein complex. Predicted to be active in nucleoplasm. Human ortholog(s) of this gene implicated in Sjogren's syndrome and syndromic X-linked intellectual disability. Orthologous to several human genes including HNRNPH1 (heterogeneous nuclear ribonucleoprotein H1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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Location:
chromosome: 14
Exon count:
11
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (6991176..7014588)
105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (6684452..6708154)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein A/Ba Neighboring gene eukaryotic translation initiation factor 4E binding protein 3, like Neighboring gene RUN and FYVE domain containing 1 Neighboring gene heparin-binding EGF-like growth factor a Neighboring gene si:ch73-43g23.1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Variants in HNRNPH1 are associated with high myopia in humans and ocular coloboma in zebrafish. Ouyang J, et al. Clin Genet, 2022 Nov. PMID 35989590
  2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Variants in HNRNPH1 are associated with high myopia in humans and ocular coloboma in zebrafish.
    Title: Variants in HNRNPH1 are associated with high myopia in humans and ocular coloboma in zebrafish.
Submit: New GeneRIF Correction

General gene information

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Markers

Homology

Clone Names

  • MGC77712

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of RNA splicing IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of ribonucleoprotein complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
heterogeneous nuclear ribonucleoprotein H; heterogeneous nuclear ribonucleoprotein H1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_205684.1 → NP_991247.1  heterogeneous nuclear ribonucleoprotein H

    See identical proteins and their annotated locations for NP_991247.1

    Status: PROVISIONAL

    Source sequence(s)
    BC065439
    UniProtKB/TrEMBL
    A0A8M1PEX0, Q6P0V0
    Related
    ENSDARP00000059917.4, ENSDART00000059918.6
    Conserved Domains (4) summary
    COG0724
    Location:5 → 74
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12729
    Location:6 → 84
    RRM1_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
    cd12734
    Location:251 → 326
    RRM3_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
    cl17169
    Location:89 → 184
    RRM_SF; RNA recognition motif (RRM) superfamily

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    6991176..7014588
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005169581.4 → XP_005169638.1  heterogeneous nuclear ribonucleoprotein H1 isoform X3

    UniProtKB/TrEMBL
    A0A8M2BGZ6
    Conserved Domains (4) summary
    COG0724
    Location:5 → 74
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12729
    Location:6 → 84
    RRM1_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
    cd12734
    Location:251 → 326
    RRM3_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
    cl17169
    Location:89 → 184
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_005169579.4 → XP_005169636.1  heterogeneous nuclear ribonucleoprotein H1 isoform X1

    UniProtKB/TrEMBL
    A0A0R4IZE3, A0A8M2BGU6
    Related
    ENSDARP00000141886.1, ENSDART00000157635.2
    Conserved Domains (4) summary
    COG0724
    Location:5 → 74
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12729
    Location:6 → 84
    RRM1_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
    cd12734
    Location:251 → 326
    RRM3_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
    cl17169
    Location:89 → 184
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. XM_021480996.1 → XP_021336671.1  heterogeneous nuclear ribonucleoprotein H1 isoform X4

    UniProtKB/TrEMBL
    A0A8M9QKJ1
    Conserved Domains (3) summary
    cd12729
    Location:6 → 84
    RRM1_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
    cd12734
    Location:251 → 326
    RRM3_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
    cl17169
    Location:89 → 184
    RRM_SF; RNA recognition motif (RRM) superfamily

  4. XM_005169580.4 → XP_005169637.1  heterogeneous nuclear ribonucleoprotein H1 isoform X2

    UniProtKB/TrEMBL
    A0A8M2BGV0
    Conserved Domains (4) summary
    COG0724
    Location:5 → 74
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12729
    Location:6 → 84
    RRM1_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
    cd12734
    Location:251 → 326
    RRM3_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
    cl17169
    Location:89 → 184
    RRM_SF; RNA recognition motif (RRM) superfamily

  5. XM_005169582.4 → XP_005169639.1  heterogeneous nuclear ribonucleoprotein H1 isoform X5

    UniProtKB/TrEMBL
    A0A8M2BGX3
    Conserved Domains (2) summary
    COG0724
    Location:88 → 144
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12734
    Location:88 → 163
    RRM3_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
Nucleotide Protein
Heading Accession and Version

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