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CANX calnexin [ Canis lupus familiaris (dog) ]

Gene ID: 403908, updated on 28-Sep-2021

Summary

Official Symbol
CANXprovided by VGNC
Official Full Name
calnexinprovided by VGNC
Primary source
VGNC:VGNC:38695
See related
EnsemblRapid:ENSCAFG00845008030
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
PP90
Orthologs
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Genomic context

See CANX in Genome Data Viewer
Location:
chromosome: 11
Exon count:
15
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 11 NC_051815.1 (1940260..1973222, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 11 NC_006593.4 (2089958..2121930, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 11 NC_049232.1 (2232031..2264021, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 11 NC_049271.1 (1912686..1944662, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 11 NC_049752.1 (1991514..2023492, complement)
105 previous assembly CanFam3.1 (GCF_000002285.3) 11 NC_006593.3 (1966612..1998620, complement)

Chromosome 11 - NC_051815.1Genomic Context describing neighboring genes Neighboring gene alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B Neighboring gene leukotriene C4 synthase Neighboring gene mastermind like transcriptional coactivator 1 Neighboring gene chibby family member 3 Neighboring gene heterogeneous nuclear ribonucleoprotein H1

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by GO

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in clathrin-dependent endocytosis ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in synaptic vesicle endocytosis ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
located_in endoplasmic reticulum ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in endoplasmic reticulum membrane ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in melanosome IEA
Inferred from Electronic Annotation
more info
 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001003232.1NP_001003232.1  calnexin precursor

    See identical proteins and their annotated locations for NP_001003232.1

    Status: PROVISIONAL

    Source sequence(s)
    X53616
    UniProtKB/Swiss-Prot
    P24643
    Related
    ENSCAFP00845011027.1, ENSCAFT00845014224.1
    Conserved Domains (1) summary
    pfam00262
    Location:72441
    Calreticulin; Calreticulin family

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051815.1 Reference ROS_Cfam_1.0

    Range
    1940260..1973222 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038680905.1XP_038536833.1  calnexin isoform X1

    Related
    ENSCAFP00845010988.1, ENSCAFT00845014173.1
    Conserved Domains (1) summary
    pfam00262
    Location:72441
    Calreticulin; Calreticulin family

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049271.1 Alternate UMICH_Zoey_3.1

    Range
    1912686..1944662 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049752.1 Alternate UNSW_CanFamBas_1.0

    Range
    1991514..2023492 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049232.1 Alternate UU_Cfam_GSD_1.0

    Range
    2232031..2264021 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006593.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    2089958..2121930 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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